View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_high_30 (Length: 325)

Name: NF12820_high_30
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_high_30
NF12820_high_30
[»] chr4 (2 HSPs)
chr4 (51-92)||(35884262-35884303)
chr4 (56-93)||(36832827-36832864)
[»] chr6 (1 HSPs)
chr6 (52-93)||(24093856-24093897)
[»] chr3 (1 HSPs)
chr3 (52-93)||(9596368-9596409)
[»] chr8 (6 HSPs)
chr8 (54-90)||(44912249-44912285)
chr8 (57-93)||(45183575-45183611)
chr8 (54-93)||(15546670-15546709)
chr8 (222-273)||(36849668-36849719)
chr8 (224-258)||(36644080-36644114)
chr8 (52-93)||(12929070-12929111)
[»] chr5 (3 HSPs)
chr5 (52-92)||(38307968-38308008)
chr5 (54-92)||(6963603-6963641)
chr5 (52-93)||(6662120-6662161)


Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 92
Target Start/End: Original strand, 35884262 - 35884303
Alignment:
Q  51 gtcaaaaatagaaacaaattataaatttgatgtagaaaaagt 92  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  35884262 gtcaaaaatagaaataaattataaatttgatgtagaaaaagt 35884303  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 36832827 - 36832864
Alignment:
Q  56 aaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  36832827 aaatagaaataaattataaattttatgtagaaaaagtt 36832864  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 24093897 - 24093856
Alignment:
Q  52 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    |||||||||||||  |||||||||||||||||||||||||||    
T  24093897 tcaaaaatagaaatgaattataaatttgatgtagaaaaagtt 24093856  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 9596409 - 9596368
Alignment:
Q  52 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    ||||||||||||| |||||||||||||||||| |||||||||    
T  9596409 tcaaaaatagaaataaattataaatttgatgtggaaaaagtt 9596368  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 44912285 - 44912249
Alignment:
Q  54 aaaaatagaaacaaattataaatttgatgtagaaaaa 90  Q
    ||||||||||| |||||||||||||||||||||||||    
T  44912285 aaaaatagaaataaattataaatttgatgtagaaaaa 44912249  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 45183575 - 45183611
Alignment:
Q  57 aatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    |||||||| ||||||||||||||||||||||||||||    
T  45183575 aatagaaataaattataaatttgatgtagaaaaagtt 45183611  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 15546670 - 15546709
Alignment:
Q  54 aaaaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    ||||||||||| ||||||||||||||||| ||||||||||    
T  15546670 aaaaatagaaataaattataaatttgatgcagaaaaagtt 15546709  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 36849668 - 36849719
Alignment:
Q  222 tattaatgcaatatcaaaatccacaatcatatgctcagtgttgaccaaataa 273  Q
    ||||||| |||||||||||||||||||| ||||| |||  ||||||||||||    
T  36849668 tattaatacaatatcaaaatccacaatcctatgcccagccttgaccaaataa 36849719  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 258
Target Start/End: Complemental strand, 36644114 - 36644080
Alignment:
Q  224 ttaatgcaatatcaaaatccacaatcatatgctca 258  Q
    ||||||||||||||||||||||||||||| |||||    
T  36644114 ttaatgcaatatcaaaatccacaatcataagctca 36644080  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 12929111 - 12929070
Alignment:
Q  52 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    ||||||||| ||| ||||||||||||||||| ||||||||||    
T  12929111 tcaaaaataaaaataaattataaatttgatgcagaaaaagtt 12929070  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 38308008 - 38307968
Alignment:
Q  52 tcaaaaatagaaacaaattataaatttgatgtagaaaaagt 92  Q
    ||||||||||||| ||||||| |||||||||||||||||||    
T  38308008 tcaaaaatagaaataaattatgaatttgatgtagaaaaagt 38307968  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 6963603 - 6963641
Alignment:
Q  54 aaaaatagaaacaaattataaatttgatgtagaaaaagt 92  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  6963603 aaaaatagaaataaattataaatttaatgtagaaaaagt 6963641  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 6662161 - 6662120
Alignment:
Q  52 tcaaaaatagaaacaaattataaatttgatgtagaaaaagtt 93  Q
    |||||||| |||| || |||||||||||||||||||||||||    
T  6662161 tcaaaaattgaaataatttataaatttgatgtagaaaaagtt 6662120  T

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