View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_high_31 (Length: 323)

Name: NF12820_high_31
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_high_31
NF12820_high_31
[»] chr2 (20 HSPs)
chr2 (1-313)||(37091935-37092247)
chr2 (9-72)||(17981594-17981657)
chr2 (1-82)||(5394485-5394566)
chr2 (1-82)||(37179972-37180053)
chr2 (1-65)||(25423833-25423897)
chr2 (1-74)||(31579208-31579281)
chr2 (9-74)||(42745095-42745160)
chr2 (9-82)||(14551571-14551644)
chr2 (1-63)||(9438126-9438188)
chr2 (7-82)||(17655756-17655833)
chr2 (1-61)||(7020352-7020412)
chr2 (1-72)||(18105344-18105414)
chr2 (1-65)||(13835445-13835509)
chr2 (1-41)||(14121894-14121934)
chr2 (10-65)||(1682120-1682175)
chr2 (15-65)||(14412824-14412874)
chr2 (4-50)||(39401072-39401118)
chr2 (1-62)||(3562181-3562242)
chr2 (12-65)||(38372982-38373035)
chr2 (7-63)||(39562260-39562316)
[»] chr4 (21 HSPs)
chr4 (114-285)||(17346262-17346433)
chr4 (114-285)||(17137361-17137529)
chr4 (1-82)||(31307037-31307118)
chr4 (1-82)||(9012359-9012440)
chr4 (1-82)||(35972432-35972513)
chr4 (1-74)||(51626285-51626358)
chr4 (1-65)||(38766178-38766242)
chr4 (1-82)||(46016238-46016319)
chr4 (1-82)||(33529346-33529427)
chr4 (1-82)||(46250526-46250607)
chr4 (1-65)||(14854694-14854758)
chr4 (2-72)||(35334079-35334149)
chr4 (4-65)||(15133467-15133528)
chr4 (7-82)||(45994617-45994692)
chr4 (3-58)||(13948587-13948642)
chr4 (22-72)||(32005127-32005177)
chr4 (1-50)||(13686691-13686740)
chr4 (9-75)||(18841582-18841649)
chr4 (1-82)||(31308386-31308467)
chr4 (1-49)||(36990098-36990146)
chr4 (128-204)||(55295338-55295414)
[»] chr8 (15 HSPs)
chr8 (4-82)||(2744025-2744103)
chr8 (1-82)||(4124995-4125076)
chr8 (1-82)||(7839224-7839305)
chr8 (1-82)||(19715696-19715778)
chr8 (1-82)||(13468716-13468797)
chr8 (1-82)||(30936093-30936174)
chr8 (15-76)||(39086855-39086916)
chr8 (7-61)||(12958077-12958131)
chr8 (7-82)||(8521793-8521867)
chr8 (1-42)||(30056012-30056053)
chr8 (1-65)||(40320185-40320249)
chr8 (3-74)||(13005657-13005728)
chr8 (7-50)||(36994503-36994546)
chr8 (8-46)||(24988595-24988633)
chr8 (1-42)||(15683018-15683059)
[»] chr7 (25 HSPs)
chr7 (1-82)||(29059894-29059975)
chr7 (1-82)||(31492192-31492273)
chr7 (7-72)||(21747021-21747086)
chr7 (9-89)||(37339697-37339777)
chr7 (9-82)||(28665187-28665260)
chr7 (1-82)||(19477223-19477301)
chr7 (7-81)||(31776513-31776587)
chr7 (1-82)||(11486715-11486796)
chr7 (4-81)||(45778956-45779033)
chr7 (8-75)||(20207593-20207660)
chr7 (1-82)||(33299168-33299249)
chr7 (7-72)||(35707941-35708006)
chr7 (1-82)||(28537479-28537556)
chr7 (1-39)||(14545032-14545070)
chr7 (7-84)||(25421210-25421286)
chr7 (1-50)||(29428795-29428844)
chr7 (20-73)||(36821060-36821113)
chr7 (6-74)||(3231313-3231381)
chr7 (1-65)||(24172298-24172362)
chr7 (1-82)||(32470005-32470088)
chr7 (4-62)||(28828756-28828814)
chr7 (7-65)||(42741797-42741854)
chr7 (8-82)||(1424669-1424745)
chr7 (25-82)||(49118220-49118277)
chr7 (1-37)||(13254117-13254153)
[»] chr5 (10 HSPs)
chr5 (1-82)||(5123469-5123550)
chr5 (1-82)||(10592016-10592097)
chr5 (9-82)||(22187969-22188042)
chr5 (7-82)||(31113429-31113504)
chr5 (1-72)||(30784967-30785038)
chr5 (4-82)||(29553631-29553709)
chr5 (1-82)||(25983754-25983835)
chr5 (1-49)||(36212985-36213033)
chr5 (1-78)||(373739-373816)
chr5 (140-187)||(6796801-6796848)
[»] chr3 (21 HSPs)
chr3 (9-82)||(8757441-8757514)
chr3 (1-82)||(20861337-20861418)
chr3 (1-82)||(27763810-27763891)
chr3 (1-82)||(30995936-30996017)
chr3 (1-82)||(25224788-25224869)
chr3 (3-82)||(1642697-1642776)
chr3 (7-82)||(55123192-55123267)
chr3 (4-82)||(48204282-48204360)
chr3 (1-82)||(38331217-38331299)
chr3 (4-81)||(22288327-22288404)
chr3 (20-76)||(40318426-40318482)
chr3 (1-82)||(44941236-44941316)
chr3 (34-81)||(22288643-22288690)
chr3 (1-43)||(15446085-15446127)
chr3 (16-82)||(40294716-40294782)
chr3 (8-65)||(39950308-39950365)
chr3 (5-82)||(46725518-46725594)
chr3 (1-41)||(15283160-15283200)
chr3 (7-82)||(25739182-25739258)
chr3 (22-82)||(43621282-43621342)
chr3 (1-65)||(48210948-48211012)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-83)||(26420-26502)
[»] chr1 (20 HSPs)
chr1 (8-82)||(16756178-16756252)
chr1 (1-74)||(42297421-42297494)
chr1 (1-82)||(36806700-36806781)
chr1 (1-84)||(15642544-15642628)
chr1 (1-82)||(49071666-49071747)
chr1 (1-70)||(28724761-28724830)
chr1 (2-65)||(9780977-9781040)
chr1 (17-75)||(18428120-18428178)
chr1 (116-281)||(8571806-8571971)
chr1 (7-82)||(22022215-22022290)
chr1 (1-76)||(46864180-46864255)
chr1 (1-42)||(12035639-12035680)
chr1 (1-82)||(44913198-44913279)
chr1 (26-66)||(7242794-7242834)
chr1 (14-74)||(32534184-32534244)
chr1 (8-47)||(6607700-6607739)
chr1 (7-50)||(10367599-10367642)
chr1 (23-54)||(21774671-21774702)
chr1 (9-82)||(39547335-39547408)
chr1 (1-65)||(10750686-10750750)
[»] chr6 (12 HSPs)
chr6 (2-82)||(12836868-12836948)
chr6 (1-79)||(12411237-12411315)
chr6 (8-82)||(21910301-21910374)
chr6 (4-65)||(28099335-28099396)
chr6 (3-63)||(9536858-9536918)
chr6 (1-52)||(21028843-21028894)
chr6 (1-52)||(21028980-21029031)
chr6 (1-39)||(423744-423782)
chr6 (1-63)||(31412211-31412273)
chr6 (9-64)||(17177235-17177290)
chr6 (1-82)||(278480-278561)
chr6 (1-50)||(28933227-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (8-82)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-65)||(27213-27277)
[»] scaffold0071 (1 HSPs)
scaffold0071 (1-43)||(16065-16107)


Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 37092247 - 37091935
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaatgttaacagtat 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||    
T  37092247 tgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggatacccggtttacaccaaaaaagactaatgttaagagtat 37092148  T
Q  101 gtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaacttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092147 gtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaacttta 37092048  T
Q  201 cttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092047 cttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaa 37091948  T
Q  301 cagccgccctatg 313  Q
    |||||||||||||    
T  37091947 cagccgccctatg 37091935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 17981594 - 17981657
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5394485 - 5394566
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||| |||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaa 5394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 37180053 - 37179972
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaa 37179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25423833 - 25423897
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31579281 - 31579208
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 42745160 - 42745095
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 14551571 - 14551644
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||  | |||| |||||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttataccaaaaaa 14551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 63  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 17655756 - 17655833
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagtt--gtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||| | |||||| |||||||||||||||||||||||||  ||||| |||||||||| | ||||| ||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttacgccaaaaaa 17655833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7020412 - 7020352
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 61  Q
    ||||| |||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||    
T  7020412 tgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18105414 - 18105344
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatatccggttta 18105344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 13835509 - 13835445
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    |||||| |||||| ||||||||||| | ||||||||||| || ||||||||| | ||||||||||    
T  13835509 tgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14121934 - 14121894
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtct 41  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  14121934 tgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 65
Target Start/End: Original strand, 1682120 - 1682175
Alignment:
Q  10 tttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||||||| | ||| ||||||||||||||||||||||||| || | |||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 14412824 - 14412874
Alignment:
Q  15 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  14412824 gtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 39401118 - 39401072
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3562242 - 3562181
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 62  Q
    ||||| ||||||||||||||||| ||| |||| | |||||| |||||||| |||||| ||||    
T  3562242 tgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 38373035 - 38372982
Alignment:
Q  12 tgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||||||||||||||| ||| ||||||||   |||||| ||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacc 38372982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 63  Q
    |||||||  |||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 5e-47; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 114 - 285
Target Start/End: Original strand, 17346262 - 17346433
Alignment:
Q  114 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 213  Q
    |||||||||||||||  |||||||| || |||||||| |||||||| ||||| ||||| ||||||||  | ||||| |||||||| |||||| |||||||    
T  17346262 ataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca 17346361  T
Q  214 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 285  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  17346362 agtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatgg 17346433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 17137529 - 17137361
Alignment:
Q  114 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 213  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||| ||||| ||||| ||||||||  | |||||  |||||   |||||| |||||||    
T  17137529 ataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttca 17137433  T
Q  214 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 285  Q
    |||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  17137432 agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatgg 17137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31307118 - 31307037
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 9012359 - 9012440
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||    
T  9012359 tgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 35972432 - 35972513
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  35972432 tgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 51626358 - 51626285
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 38766178 - 38766242
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 46016238 - 46016319
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33529346 - 33529427
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||| || |||||||||||||||||||||| || ||||||||||  | |||||||| |||||    
T  33529346 tgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaa 33529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 46250607 - 46250526
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| | || |||||||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggataaccggattacaccaaaaaa 46250526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 14854694 - 14854758
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| |||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  14854694 tgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 35334149 - 35334079
Alignment:
Q  2 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggttta 35334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 15133467 - 15133528
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  15133467 cgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 45994617 - 45994692
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||  ||||||||  ||||| |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaa 45994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  3 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcgga 58  Q
    |||||||||||  || |||||||||||||||||||||||| ||||||| |||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 32005177 - 32005127
Alignment:
Q  22 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccggttta 32005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13686691 - 13686740
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    ||||||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  13686691 tgccgtccatttgggtctcacaaggctcgagagattagtctccacagttg 13686740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 18841582 - 18841649
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgc-agttgtgcgcggaggataccgggtttacac 75  Q
    |||||| ||| |||| |||| |||||||||||||||| ||||| || ||||||||||| |||||||||    
T  18841582 atttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31308386 - 31308467
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||| |||| |||||||||||| | ||||||||||||  | |||||||| |||||| |||||   |||||| |||||||    
T  31308386 tgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttacatcaaaaaa 31308467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36990146 - 36990098
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 49  Q
    |||||||||||||  ||||||||||||||||| |||||| | |||||||    
T  36990146 tgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagtt 36990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 55295338 - 55295414
Alignment:
Q  128 cagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttactta 204  Q
    ||||| |||||||| |||||||| |||||||| | ||| ||||||||||| || || || ||| ||||||| |||||    
T  55295338 cagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcactta 55295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 2744025 - 2744103
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4125076 - 4124995
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 7839305 - 7839224
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || ||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgggttatacaaaaaaa 7839224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19715778 - 19715696
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19715778 tgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacacaaaaaaa 19715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 13468797 - 13468716
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaa 13468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30936093 - 30936174
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccggtttataccaaaaaa 30936174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 39086855 - 39086916
Alignment:
Q  15 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 76  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 61  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 8521793 - 8521867
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | ||||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30056053 - 30056012
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctc 42  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 40320185 - 40320249
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||||| |||||| |||||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40320185 tgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 13005728 - 13005657
Alignment:
Q  3 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||| |||||||| ||||||  |||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacctagtttaca 13005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 36994546 - 36994503
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 24988595 - 24988633
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgca 46  Q
    |||||| |||||||||| |||||||||||||||||||||    
T  24988595 catttgagtcccacaatactcgagggattagtctccgca 24988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctc 42  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 29059894 - 29059975
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31492192 - 31492273
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 21747086 - 21747021
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 37339777 - 37339697
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaat 89  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||| ||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaatactaat 37339697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 28665187 - 28665260
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19477301 - 19477223
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  19477301 tgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggatagctggtttacacccaaaaa 19477223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 7 - 81
Target Start/End: Original strand, 31776513 - 31776587
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 81  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| | |||||||||||| |||||| ||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggtttataccaaaaa 31776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11486796 - 11486715
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||| ||||||||||| || ||||||||||  |||||| |||||||||||||| ||||||||| ||||||    
T  11486796 tgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacacaaaaaaa 11486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 45778956 - 45779033
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 81  Q
    ||||| |||| ||| |||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 20207593 - 20207660
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 75  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||    
T  20207593 catttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttacac 20207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33299168 - 33299249
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||| ||||||||| | ||||||||||  | |||||||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  33299168 tgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacacaaaaaaa 33299249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 35707941 - 35708006
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 28537479 - 28537556
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||  |||| |||||||| |||||| |||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccggtttataccaaaaaa 28537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagt 39  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 25421286 - 25421210
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaaga 84  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||  | ||||||||||  |||||||||||||||||    
T  25421286 ccatttgggtcccacaaagctcaagggattagtgtttgcagttgt-agtggaggatacccagtttacaccaaaaaaga 25421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 29428844 - 29428795
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    ||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  29428844 tgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  20 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac 73  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 3231313 - 3231381
Alignment:
Q  6 tccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||| ||||||||||||| | ||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24172298 - 24172362
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| ||| |||| ||||||||||||||| ||||||||||  ||||||| |||||||| |||||    
T  24172298 tgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 32470005 - 32470088
Alignment:
Q  1 tgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||  ||||||||||| | |||||| ||| |||||    
T  32470005 tgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaaaa 32470088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 62  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||  ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 42741854 - 42741797
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacc 42741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 1424669 - 1424745
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcg--cggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||  || ||| |||||||||||||||||| |||  || |||| ||| | ||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgcacgaaggacacccgatttacaccaaaaaa 1424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 49118277 - 49118220
Alignment:
Q  25 gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||||||| |||||| ||||| | || |||| ||||||||| ||||||    
T  49118277 gctcgagggattagtctctgcagttttgcgcagtggttacccggtttacacaaaaaaa 49118220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggatta 37  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 5123550 - 5123469
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 10592016 - 10592097
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 22188042 - 22187969
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaa 22187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 31113429 - 31113504
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaa 31113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30785038 - 30784967
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 72  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 29553631 - 29553709
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||||||  | ||||| |||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccagattacaacaaaaaa 29553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25983754 - 25983835
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||| |||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  25983754 tgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36212985 - 36213033
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 49  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212985 tgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 373816 - 373739
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaa 78  Q
    ||||||| |||||||||  |||||| || |||||||| |||||||||||| || |||||||||||   ||||||||||    
T  373816 tgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacaccaa 373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 6796801 - 6796848
Alignment:
Q  140 aattcatggcaagatggagtatatggaacaaactgtccaattccacca 187  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||    
T  6796801 aattcatggcaagatggagtactgggaacaaactgtcctattccacca 6796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 8757441 - 8757514
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 20861337 - 20861418
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 27763810 - 27763891
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacacaaaaaaa 27763891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 30996017 - 30995936
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacctaaaaa 30995936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 25224788 - 25224869
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  25224788 tgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

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Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 1642697 - 1642776
Alignment:
Q  3 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 55123192 - 55123267
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgatttataccaaaaaa 55123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 48204360 - 48204282
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||| |||||    
T  48204360 cgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaa 48204282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 38331217 - 38331299
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac-accaaaaaa 82  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||    
T  38331217 tgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 22288327 - 22288404
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 81  Q
    |||||||||| ||  |||||| ||| ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288327 cgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  20 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 76  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 44941316 - 44941236
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||| |||||  |||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||||    
T  44941316 tgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttataccaaaaaa 44941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 22288643 - 22288690
Alignment:
Q  34 attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 81  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288643 attagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 15446085 - 15446127
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctcc 43  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  15446085 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 40294716 - 40294782
Alignment:
Q  16 tcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||| ||||| ||||||||||||||||||| || |  |||||||| | ||||||||||||||    
T  40294716 tcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttacaccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 39950308 - 39950365
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||   ||||||||||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 82
Target Start/End: Original strand, 46725518 - 46725594
Alignment:
Q  5 gtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||| ||||||| |||||||| ||||||||||||||  |||||  |||||||||||||  |||||||||| |||||    
T  46725518 gtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaa 46725594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15283160 - 15283200
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtct 41  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  15283160 tgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 25739182 - 25739258
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgca-gttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||| ||  |||||   ||||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacaccaaaaaa 25739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 43621342 - 43621282
Alignment:
Q  22 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||| | || ||| |||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaa 43621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 48211012 - 48210948
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||||| |||| ||||||||||| ||||||| |||  ||||||||||||  |||||| ||||||    
T  48211012 tgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacc 48210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26420 - 26502
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaag 83  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 16756178 - 16756252
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 42297494 - 42297421
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||| |||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 15642544 - 15642628
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca-ccaaaaaaga 84  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | |||||| ||||||||||    
T  15642544 tgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 49071666 - 49071747
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| | | ||||||||||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaa 49071747  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28724761 - 28724830
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtt 70  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 9781040 - 9780977
Alignment:
Q  2 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  17 cccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 75  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 8571971 - 8571806
Alignment:
Q  116 aggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaag 215  Q
    ||||||||||| |||||||| ||||| ||||   |||||||||| | ||||||||  ||||| |||||||| ||  ||||||| || ||  | |||||||    
T  8571971 aggaatggagtccagcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaag 8571872  T
Q  216 taaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggtt 281  Q
    |||||||||| |||||||| | || ||| || || || |||||||| ||||| || || |||||||    
T  8571871 taaaagatcaaattggtagtttctattatttcccatctcttgcattccacaaagctgctggtggtt 8571806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 22022215 - 22022290
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  || ||||||||||  || ||||| ||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 46864180 - 46864255
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 76  Q
    ||||||||||||||||  ||||||| |||||||||||||||| ||||||| ||||  |||||||| | ||||||||    
T  46864180 tgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12035639 - 12035680
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctc 42  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 44913198 - 44913279
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| |||| |||||||||||||||||||| |||||||||| ||||||  |||| |||||||||   ||||||| ||||||    
T  44913198 tgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacacaaaaaaa 44913279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 7242834 - 7242794
Alignment:
Q  26 ctcgagggattagtctccgcagttgtgcgcggaggataccg 66  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagataccg 7242794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 74
Target Start/End: Original strand, 32534184 - 32534244
Alignment:
Q  14 ggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 74  Q
    |||| ||||||||||||| | |||||||||||| ||| |||| ||||||||| ||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 6607739 - 6607700
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcag 47  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcag 6607700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 10367599 - 10367642
Alignment:
Q  7 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttg 10367642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 21774671 - 21774702
Alignment:
Q  23 atgctcgagggattagtctccgcagttgtgcg 54  Q
    ||||||||||||||||||||||||||||||||    
T  21774671 atgctcgagggattagtctccgcagttgtgcg 21774702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 39547408 - 39547335
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||| |||| ||||||| |||| |||||| |||||||||||| |||| ||||||  | |||||||||| |||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaa 39547335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 10750686 - 10750750
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| |||||||| || ||||||| |||||||||||||||   |||||| |||| |||||||||    
T  10750686 tgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacc 10750750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 12836948 - 12836868
Alignment:
Q  2 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaa 12836868  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 12411237 - 12411315
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaa 79  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |||||| ||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttataccaaa 12411315  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 21910301 - 21910374
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaaaa 21910374  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 28099335 - 28099396
Alignment:
Q  4 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  3 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 63  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21028894 - 21028843
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 52  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21028894 tgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21029031 - 21028980
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 52  Q
    ||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21029031 tgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagt 39  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31412211 - 31412273
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 63  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| |||||| || |||||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggata 31412273  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 17177235 - 17177290
Alignment:
Q  9 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatac 64  Q
    |||||| || |||||| |||||||||||| |||||| | |||||||||||||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 278480 - 278561
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||| ||||||||||  ||| |||||||||||  | ||||||  | ||||||||||| | ||||| ||||||||    
T  278480 tgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttaccccaaaaaa 278561  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 28933227 - 28933276
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 50  Q
    ||||| |||||||||| |||||||||||||| || |||| ||||||||||    
T  28933227 tgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttg 28933276  T

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Target: scaffold0013 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 29197 - 29123
Alignment:
Q  8 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 82  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacacaaaaaaa 29123  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27277 - 27213
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 65  Q
    ||||| |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  27277 tgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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Target: scaffold0071 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16107 - 16065
Alignment:
Q  1 tgccgtccatttgggtcccacaatgctcgagggattagtctcc 43  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  16107 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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