View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_34 (Length: 303)
Name: NF12820_high_34
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_34 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 50 - 295
Target Start/End: Original strand, 42227192 - 42227437
Alignment:
| Q |
50 |
gtcaccacactttaagtaaccgatcccgtgccaagcatcaaatttaattgtaaggcttaaactcacagttctttagtgtctagatacctcgtgaattggt |
149 |
Q |
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| T |
42227192 |
gtcaccacactttaagtaaccgatctcgtgccaagcatcaaatttaattgtaaggcttaaactcacagttctttagtgtctagatacctcgtgaattggt |
42227291 |
T |
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| Q |
150 |
agtactgatgtagttctgctgtgtagtgaaacacaagtaactccaaaatgataaaatcagtgttttcaaaactgaatgaacggaccaaccagttgaacct |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42227292 |
agtactgatgtagttctgctgtgtagtgaaacacaagtaactccaaaatgataaaatcagtgttttcaaaactgaatgaacggaccaaccagttgaacct |
42227391 |
T |
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| Q |
250 |
tgaattgacttttattataggtcggttattttcacggtttcatctc |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42227392 |
tgaattgacttttattataggtcggttattttcacggtttcatctc |
42227437 |
T |
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