View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_39 (Length: 269)
Name: NF12820_high_39
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 35366162 - 35366400
Alignment:
| Q |
18 |
gtatctatatgaaaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatgga |
117 |
Q |
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||||||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35366162 |
gtatctaaatgaaaacaagttgtctggtgaaatcccaaatgacctaggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatgga |
35366261 |
T |
|
| Q |
118 |
ggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaatctca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35366262 |
ggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaatctca |
35366361 |
T |
|
| Q |
218 |
cacttttaaatactttgaacctgtcttttaacaatctct |
256 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35366362 |
cacttttaaatactttgaacctgtcttttaacaatctct |
35366400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 35422968 - 35423200
Alignment:
| Q |
22 |
ctatatgaaaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatggaggta |
121 |
Q |
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| T |
35422968 |
ctatatgaaaacaagttgtctggtgaaattccgagtgaccttggcacttgtttatcattaacagagcttatactggagagaaactttttccatggcagta |
35423067 |
T |
|
| Q |
122 |
taccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttgaactagaaaatctcacact |
221 |
Q |
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| T |
35423068 |
taccttggttcttgggatcattaagatccctagaagtcttagacatttcaaataatagtttttcaagcacaatcccccttgaactagaaaatttagtata |
35423167 |
T |
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| Q |
222 |
tttaaatactttgaacctgtcttttaacaatct |
254 |
Q |
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||| ||||||||| || |||||||||||||||| |
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| T |
35423168 |
tttgaatactttggacttgtcttttaacaatct |
35423200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 254
Target Start/End: Original strand, 35375790 - 35375944
Alignment:
| Q |
103 |
aactttttccatggaggtataccttcattcttgggttc---tttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccct |
199 |
Q |
| |
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||||| || |||||| ||||||||| ||||||||||| |||||| || | ||||| |||||| ||||| || | ||| ||||| | ||| |||| |
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| T |
35375790 |
aacttctttcatggaagtatacctttgttcttgggttcctctttaaggtcccttgaaatcttagacctttctggcaataatttttcaagcataatcccct |
35375889 |
T |
|
| Q |
200 |
ttgaactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatct |
254 |
Q |
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||||||||||||||| ||| |||| ||||||||| || |||||||||||||||| |
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| T |
35375890 |
ctgaactagaaaatctaacatttttgaatactttggacttgtcttttaacaatct |
35375944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 35754177 - 35754245
Alignment:
| Q |
79 |
ttaacaaagcttgtgttgaagaacaactttttccatggaggtataccttcattcttgggttctttaaga |
147 |
Q |
| |
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| T |
35754177 |
ttaacagagcttttgttggaggaaaactttttccatggagatataccttcgttcttgggctctttaaga |
35754245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 35436324 - 35436431
Alignment:
| Q |
30 |
aaacaagttgtccggcgaaatcccaaatgacctcggtgcttgttttacattaacaaagcttgtgttgaagaacaactttttccatggaggtataccttca |
129 |
Q |
| |
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||||||||||||||| |||| || ||||| || | || |||||| ||| ||| ||||| ||||| ||| ||||||||||||||| |||||||||| |
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| T |
35436324 |
aaacaagttgtccggtcaaattcccaatgaacttgctggttgtttgacactaattgagcttatgttgcagagaaactttttccatggaagtataccttcc |
35436423 |
T |
|
| Q |
130 |
ttcttggg |
137 |
Q |
| |
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|||||||| |
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| T |
35436424 |
ttcttggg |
35436431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 10421390 - 10421223
Alignment:
| Q |
89 |
ttgtgttgaagaacaactttttccatggaggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaag |
188 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
10421390 |
ttgtgttgaagaacaactttttccatggagttataccttcattcttgggttctttaagatctctagaaatattagacatgtctaataacagtctctcaag |
10421291 |
T |
|
| Q |
189 |
tacaataccctttgaactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatctct |
256 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
10421290 |
tacaataccctatgaactagaaaatctcacacttttaaatactttgaatctgtcttttaacaatctct |
10421223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 10410700 - 10410624
Alignment:
| Q |
180 |
tttctcaagtacaataccctttgaactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatctct |
256 |
Q |
| |
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||||||||| | ||| ||| ||||||||||||| || ||| |||| |||| ||||||| |||||||||||||||||| |
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| T |
10410700 |
tttctcaagcataatccccattgaactagaaaacctaacatttttgaataatttgaacttgtcttttaacaatctct |
10410624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 10416397 - 10416339
Alignment:
| Q |
196 |
ccctttgaactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatct |
254 |
Q |
| |
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|||| ||||||||||||||| ||| |||| ||||||||| || |||||||||||||||| |
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|
| T |
10416397 |
ccctctgaactagaaaatctaacatttttgaatactttggacttgtcttttaacaatct |
10416339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 254
Target Start/End: Complemental strand, 29623927 - 29623776
Alignment:
| Q |
103 |
aactttttccatggaggtataccttcattcttgggttctttaagatctttagaaatattagacatttctaataacagtttctcaagtacaataccctttg |
202 |
Q |
| |
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||||| || |||||| |||||||||| |||||||| ||||||||||| || ||||| |||||||||||||| || ||||||||||||||||| || |||| |
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| T |
29623927 |
aacttcttgcatggaagtataccttcgttcttgggctctttaagatccttggaaatcttagacatttctaacaatagtttctcaagtacaatcccttttg |
29623828 |
T |
|
| Q |
203 |
aactagaaaatctcacacttttaaatactttgaacctgtcttttaacaatct |
254 |
Q |
| |
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|||||||||| || | | |||| || ||||||||| |||||||||||||||| |
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| T |
29623827 |
aactagaaaaactaagatttttgaagactttgaacttgtcttttaacaatct |
29623776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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