View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_high_4 (Length: 737)

Name: NF12820_high_4
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_high_4
NF12820_high_4
[»] chr6 (1 HSPs)
chr6 (59-730)||(35212279-35212950)


Alignment Details
Target: chr6 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 59 - 730
Target Start/End: Complemental strand, 35212950 - 35212279
Alignment:
Q  59 agtaccacttggtggcagaannnnnnncaacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtgg 158  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212950 agtaccacttggtggcagaaattttttcaacaggatgatggaaactggcttggtttaagggaagatgatatggttgaagaggatgtggaatttgaagtgg 35212851  T
Q  159 aagaagagcaagaattgtctgaaaatgaaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaa 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212850 aagaagagcaagaattgtctgaaaatgaaaagtttgaagcatggaagcaaagagcagaagctattatagatataagggaagcacaagaagataggaagaa 35212751  T
Q  259 tcaagaccatagaaaatgggaagactggcttttggaggatgaagatgttnnnnnnnnnnnnnnnnnnnnttcttcttcttgggagagtggaatgaaagat 358  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||                    |||||||||||||||||||||||||||||||    
T  35212750 tcaagaccatagaaaatgggaagactggcttttggaagatgaagatgttagcagcagcagcagcagcagttcttcttcttgggagagtggaatgaaagat 35212651  T
Q  359 tatagggaggagttacgaggcgaggatgatgatttcaacaaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgata 458  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212650 tatagggaggagttacgaggcgaggatgatgatttcaacgaaaataatggggttgtacagtctgttaagtatttgatttttggaagagaaaatggtgata 35212551  T
Q  459 atgatgatgatatgctttatgaagaccgtgtttttaactatgcttcttcaaattcggtatgtgcattgtgtgctagtgtttgcttaatacattctctaat 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35212550 atgatgatgatatgctttatgaagaccgtgtttttaactatgcttcttcaaattcggtatgtgcattgtgtgctagtgtttgcttaatacattctctaat 35212451  T
Q  559 tagtagtaagtcaattttatataccgaaattgtttgtttttacaggctaaatttttgggagtgttgattattataccttgggcaatggattttttggttc 658  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35212450 tagtagtaagtcaattttatataccgaaattgtttgtttttacaggctaaatttttgggagtgttgattgttataccttgggcaatggattttttggttc 35212351  T
Q  659 atgactatttactcatgccttttttagacaggtaacctactctcttactcagatcttatatttttcttctca 730  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35212350 atgactatttactcatgccttttttagacaggtaacctactttcttactcagatcttatatttttcttctca 35212279  T

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