View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_40 (Length: 262)
Name: NF12820_high_40
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 5677517 - 5677289
Alignment:
| Q |
15 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaac |
114 |
Q |
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| T |
5677517 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaac |
5677418 |
T |
|
| Q |
115 |
agtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctagaaaaggatagaaaagttaaaaataaat |
214 |
Q |
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| T |
5677417 |
agtttgctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggtgagatccctctctaaaaaaggatagaaaagttaaaaataaat |
5677318 |
T |
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| Q |
215 |
atgcttttatagagtagagatctatgtag |
243 |
Q |
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| T |
5677317 |
atgcttttatagagtagagatctatgtag |
5677289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 39777900 - 39778051
Alignment:
| Q |
21 |
ccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgatggctagagggtttaaacagtttg |
120 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||| | | || |
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| T |
39777900 |
ccagctgttgattggtgggctgaagatctaacagttcttaaaattgactttttccaaagagttctaattgcaatgatggctagagggtttaaaaattgtg |
39777999 |
T |
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| Q |
121 |
ctattggtcctattctaatgctctatgcacagaaatctctacgaggtttggt |
172 |
Q |
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| T |
39778000 |
gtattggtcctattataatgctttattcacagaaatctctgagaggtttggt |
39778051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 47798244 - 47798162
Alignment:
| Q |
15 |
cagagaccagttgttgattggtgggctgaagatctaactgttcttagaattgacctttttcaaagagttctaatagcaatgat |
97 |
Q |
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||||| |||| | ||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||| |||||||| |
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| T |
47798244 |
cagaggccagctattgattggtgggctgaagatctaactgttcttagaattgtctttttccaaagagttctaattgcaatgat |
47798162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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