View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_48 (Length: 248)
Name: NF12820_high_48
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 52373395 - 52373613
Alignment:
| Q |
13 |
acatggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggtta |
112 |
Q |
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| T |
52373395 |
acatggacatcatggttgttaatgaagaaacacttgaagctgttgaagatggtgttgaaggagaaatttgggtttcatctccaagtaatgcctctggtta |
52373494 |
T |
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| Q |
113 |
ccttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgtaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52373495 |
ccttggtcacccttctttaacaagagaagtttttcatgcaagaatcagaaacacagttcgtaagtgttttcttcgaacgggtgacaaaggaatcgtaaaa |
52373594 |
T |
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| Q |
213 |
ggagaaaacaggtatctct |
231 |
Q |
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||||||||||||||||||| |
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| T |
52373595 |
ggagaaaacaggtatctct |
52373613 |
T |
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