View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_high_5 (Length: 684)
Name: NF12820_high_5
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 1 - 674
Target Start/End: Complemental strand, 5379562 - 5378888
Alignment:
| Q |
1 |
gctgctctcgactcatcgtcaccgataacaatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379562 |
gctgctctcgactcatcgtcaccgataacaatgccacaaaaactaccttgcttaaaactaactctcaattcaagtctcaaagaccatgtatgatagatat |
5379463 |
T |
|
| Q |
101 |
atgctccacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379462 |
atgctccacaagaagactttcaatacccttagcttaccctacaagtacaattaacatttaataccaacatgcttatataatataattgtataataaagtc |
5379363 |
T |
|
| Q |
201 |
ttgtaaccaaattcaaaccatatttatcacaatctctctcaagtttnnnnnnnctttctccaacgttcacagaatcttgtttctttatttttatcacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379362 |
ttgtaaccaaattcaaaccatatttatcacaaactctctcaagtttaaaaaaactttctccaacgttcacagaatcttgtttctttatttttatcacaaa |
5379263 |
T |
|
| Q |
301 |
cataagactgattctctaacaagtacattcctaaagtagtatcaaataaacaagtgaagaatcagataccctttttgtggctcagaaagcaagatgtttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5379262 |
cataagactgattctctaacaagtacattcctaaagtagtatcaaataaacaagtgaagaatcagataccctttttgtggctcagaaagcaagatgtttt |
5379163 |
T |
|
| Q |
401 |
cacactagtagcagnnnnnnntgaagttcaaaatgcacctcaccctttcatcatttcactagctttgc-tttttgtgcctgccttcaagtttcaaatcac |
499 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5379162 |
cacactagtagcagccccccctgaagttcaaaatgcacctcaccctttcatcatttcactagctttgcttttttgtgcctgccttcaagtttcaaatcac |
5379063 |
T |
|
| Q |
500 |
aaagccaagtcaaaacagttgaaaagaaacatcttcaaaaaaggtaaagttttgtgtgtgtgatttggatccgactaacttggctctagtacctnnnnnn |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5379062 |
aaagccaagtcaaaacagttgaaaagaaacatcttcaaaaaaggtaaagttttgtgtgtgtgatttggatccgactaacttggctctagtacctaaaaaa |
5378963 |
T |
|
| Q |
600 |
ngcaacttagaaggaaaaatccaccaataattccaaatttgctatacacaaatagtatcttgggaccctatgctt |
674 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5378962 |
agcaacttagaaggaaaaatccaccaataattccaaatttgctatacacaaatagtatcttgggaccctatgctt |
5378888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 43262185 - 43262218
Alignment:
| Q |
190 |
ataataaagtcttgtaaccaaattcaaaccatat |
223 |
Q |
| |
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||||||||||||||||||||||| |||||||||| |
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| T |
43262185 |
ataataaagtcttgtaaccaaatccaaaccatat |
43262218 |
T |
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