View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_high_59 (Length: 222)
Name: NF12820_high_59
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_high_59 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 47276190 - 47276054
Alignment:
| Q |
10 |
gtagcagagaagagagaattatggacgactccagtgaccggtttccaatcggaatgcgtgttctcgccgtcgacggcgattccactcatctctcggattt |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47276190 |
gtagtagagaagagagaattatggacgactccagtgaccggtttccaatcggaatgcgtgttctcgccgtcgacggcgattccactcatctctcggattt |
47276091 |
T |
|
| Q |
110 |
agaaactcgtctccgctcatgtcaataccacggtctg |
146 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47276090 |
agaaactcgtctccgatcatgtcaataccacggtctg |
47276054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 38099603 - 38099474
Alignment:
| Q |
10 |
gtagcagagaagagagaattatggacgactccagtgaccggtttccaatcggaatgcgtgttctcgccgtcgacggcgattccactcatctctcggattt |
109 |
Q |
| |
|
|||| |||||||||||||| ||||| || |||||||| |||||||| |||||||||| |||||| | ||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
38099603 |
gtagtagagaagagagaataatggatgattccagtgatcggtttcccatcggaatgcatgttcttgtcgtagacggtgattccaattatctctcggattt |
38099504 |
T |
|
| Q |
110 |
agaaactcgtctccgctcatgtcaatacca |
139 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |
|
|
| T |
38099503 |
agaaactcgcctccgaacatgtcaatacca |
38099474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 47281566 - 47281435
Alignment:
| Q |
15 |
agagaagagagaattatggacgactccagtgaccggtttccaatcggaatgcgtgttctcgccgtcgacggcgattccactcatctctcggatttagaaa |
114 |
Q |
| |
|
|||||||||||||| ||||| || | |||||| |||||||| ||||||||||||||||| ||||| |||| ||| | ||| ||||| | ||| |||| |
|
|
| T |
47281566 |
agagaagagagaataatggatgatttcagtgatcggtttcccatcggaatgcgtgttcttgccgttgacgatgatcctacttctctcttgcttttggaaa |
47281467 |
T |
|
| Q |
115 |
ctcgtctccgctcatgtcaataccacggtctg |
146 |
Q |
| |
|
||| ||||| ||||||||||||||||||||| |
|
|
| T |
47281466 |
ctctcctccgatcatgtcaataccacggtctg |
47281435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 49062447 - 49062346
Alignment:
| Q |
43 |
gtgaccggtttccaatcggaatgcgtgttctcgccgtcgacggcgattccactcatctctcggatttagaaactcgtctccgctcatgtcaataccacgg |
142 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||| |||| |||| | ||| ||||| || ||| ||||||| |||||| ||||||||||||||| |
|
|
| T |
49062447 |
gtgaccgttttcctatcggaatgcgtgttctcgccgttgacgacgatccaacttgtctcttggttttggaaactcttctccgaagatgtcaataccacgg |
49062348 |
T |
|
| Q |
143 |
tc |
144 |
Q |
| |
|
|| |
|
|
| T |
49062347 |
tc |
49062346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University