View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_11 (Length: 531)
Name: NF12820_low_11
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 20519475 - 20518968
Alignment:
| Q |
1 |
ctctaaaatctgtattgctacttcaattgcatacctcaatttagaactatgatgtaaactatactacaattgcataacacaatttagacatatggtacaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519475 |
ctctaaaatctgtattgctacttcaattgcatacctcaaattagaactatgatgtaaactatactacaattgcataacacaatttagacatatggtacaa |
20519376 |
T |
|
| Q |
101 |
actagaaagtaagaagctttatattgagaatgaatcacacacacctttggagaatttgagaaaaagtggcaccccacaatttcttcctaaacagtccatc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519375 |
actagaaagtaagaagctttatattgagaatgaatcacacacacctttggagaatttgagaaaaagtggcaccccacaatttcttcctaaacagtccatc |
20519276 |
T |
|
| Q |
201 |
agcacaaggtctcccttcccaaagttccaaaccagcagtcacaataccaggcacaagaacaacaggatgaagtgctttaaccccttcatttttcatcctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519275 |
agcacaaggtctcccttcccaaagttccaaaccagcagtcacaataccaggcacaagaacaacaggatgaagtgctttaaccccttcatttttcatcctc |
20519176 |
T |
|
| Q |
301 |
aaaccaggtgaatcaaccacttcaaaaccagttaatgtagctggcaaaaactgatacaaaaatgaaagaagccaccaaattgtacacacataaccaatca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20519175 |
aaaccaggtgaatcaaccacttcaaaaccagttaatgtagctggcaaaaactgatacaaaaatgaaagaagccaccaaattgtacacacataaccaatca |
20519076 |
T |
|
| Q |
401 |
accaacaacagtaatcaatgcagttcttccactccttcactttactttgcttcnnnnnnnccattttcaatatttcaccgacaacataacatagtactat |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20519075 |
accaacaacagtaatcaatgcagttcttccactccttcactttactttgcttctttttttccattttcaatatttcaccgacaacataacatagtactat |
20518976 |
T |
|
| Q |
501 |
gtttgttt |
508 |
Q |
| |
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|||||||| |
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|
| T |
20518975 |
gtttgttt |
20518968 |
T |
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