View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_13 (Length: 517)
Name: NF12820_low_13
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 5655721 - 5655236
Alignment:
| Q |
1 |
tcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggt |
100 |
Q |
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| T |
5655721 |
tcaaatggttctgtgtttcttgatggtaattataaattgcatttatttaccatttgaaaacattacatttctataggtcaaaatatgttagtcaataggt |
5655622 |
T |
|
| Q |
101 |
aacactaataaaatgctgcacaaa---------------gttttaatacttttacaaatcttgtttcaatttctgtttctttatgatatctaattgtaaa |
185 |
Q |
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| T |
5655621 |
aacactaataaaatgctgcacaaattcacaagtactatagttttaatacttttacaaatcttgtttcaatttctgtttctttatgatatctaattgtaaa |
5655522 |
T |
|
| Q |
186 |
atttggttacaggaatgaaacttgtatttgagtctgagaaagcacaatgggtaggaactgatacagtaattggttgtggatttgatccaaggcaaaagaa |
285 |
Q |
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| T |
5655521 |
atttggttacaggaatgaaacttgtatttgagtctgagaaagcacaatgggtaggaactgatacagtaattggttgtggatttgatccaaggcaaaagaa |
5655422 |
T |
|
| Q |
286 |
agttttcttcacattagactcagaattggtgcatgtaatccactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagac |
385 |
Q |
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| T |
5655421 |
agttttcttcacattagactcagaattggtgcatgtaatccactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagac |
5655322 |
T |
|
| Q |
386 |
attatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagc |
471 |
Q |
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| T |
5655321 |
attatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagc |
5655236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 187 - 463
Target Start/End: Original strand, 47048974 - 47049250
Alignment:
| Q |
187 |
tttggttacaggaatgaaacttgtatttgagtctgagaaagcacaatgggtaggaactgatacagtaattggttgtggatttgatccaaggcaaaagaaa |
286 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||| ||| | ||| | ||||| |||| || |||||||||||||||||||||||||| |||||| |
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| T |
47048974 |
tttggttacaggaatgaaacttgtattcgaatctgagaaggcagagtggattggaacagataaggtgattggttgtggatttgatccaaggcagaagaaa |
47049073 |
T |
|
| Q |
287 |
gttttcttcacattagactcagaattggtgcatgtaatccactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagaca |
386 |
Q |
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| T |
47049074 |
gttttcttcacgttagactcagaattgatgcatgttgtacactgtcagacagaagaatttagcactccattgtatccaacattagctgctaatatagaca |
47049173 |
T |
|
| Q |
387 |
ttatggttttagttaattttggacaaattgcattcaaatatgctcctgcaaatgcacaaagaacaccaaatccatgc |
463 |
Q |
| |
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||||||| || || ||||||||||||| |||||| |||||||| || |||||||| ||||||||||||||||||||| |
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| T |
47049174 |
ttatggtattggtcaattttggacaaaatgcatttaaatatgcaccagcaaatgctcaaagaacaccaaatccatgc |
47049250 |
T |
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