View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_15 (Length: 505)

Name: NF12820_low_15
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_15
NF12820_low_15
[»] chr3 (5 HSPs)
chr3 (1-316)||(45386064-45386375)
chr3 (395-505)||(45386453-45386563)
chr3 (395-505)||(45390822-45390932)
chr3 (209-314)||(45390626-45390734)
chr3 (2-57)||(45390216-45390271)
[»] chr4 (2 HSPs)
chr4 (395-505)||(734430-734540)
chr4 (209-314)||(734233-734341)


Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 45386064 - 45386375
Alignment:
Q  1 gcttaactcagagttcttcagattagcttccacccattccactcctgccaatcaatttcattattacattactccacttcaataatataagtggagtgaa 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45386064 gcttacctcagagttcttcagattagcttccacccattccactcctgccaatcaatttcattattacattactccacttcaataatataagcggagtgaa 45386163  T
Q  101 tattatgcgcgtaatgatttaattggttcggtctcatttttaaaacatccaacaaattaatagtgaaaatacaattccatataattttgtaaataaaaac 200  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||| |||||||||||||||||||||     
T  45386164 tattatacgcgtaatgatttaattggttcggtctgatttttaaaacatccaaca----aatagtgaaaatacaattctatataattttgtaaataaaaag 45386259  T
Q  201 acttaaatattgtacagtacccttcattttcagtatccnnnnnnnnatctcctgtgcacaagcttcacaatgcatgtgaattttaacaacagtcacaatc 300  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45386260 acttaaatattgtacagtacccttcattttcagtatccttttttttatctcctgtgcacaagcttcacaatgcatgtgaattttaacaacagtcacaatc 45386359  T
Q  301 tgaggctgcaaatggg 316  Q
    ||||||||||||||||    
T  45386360 tgaggctgcaaatggg 45386375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 45386453 - 45386563
Alignment:
Q  395 tttacctcttttttcttcttctcttcaggtgcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45386453 tttacctcttttttcttcttctcttcaggtgcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 45386552  T
Q  495 tcctgtgactc 505  Q
    |||||||||||    
T  45386553 tcctgtgactc 45386563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 45390822 - 45390932
Alignment:
Q  395 tttacctcttttttcttcttctcttcaggtgcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 494  Q
    |||||||| | |||||||| |||||||||||||||||| ||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  45390822 tttacctcatctttcttctcctcttcaggtgcagccttctcttcctcagcaggtttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 45390921  T
Q  495 tcctgtgactc 505  Q
    | || ||||||    
T  45390922 ttctatgactc 45390932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 45390626 - 45390734
Alignment:
Q  209 attgtacagtacccttcattttcagtatccnnnnnnnnatctcctgtgcacaagcttcacaatgcatgtgaattttaacaacag---tcacaatctgagg 305  Q
    |||| |||||||| |||||||| |||||||        || |||| |||||||||||||||||||||||||| |||||  ||||   |||||||||||||    
T  45390626 attggacagtaccattcattttaagtatccgttttttgatttcctctgcacaagcttcacaatgcatgtgaactttaaggacagtaatcacaatctgagg 45390725  T
Q  306 ctgcaaatg 314  Q
    |||||||||    
T  45390726 ctgcaaatg 45390734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 45390216 - 45390271
Alignment:
Q  2 cttaactcagagttcttcagattagcttccacccattccactcctgccaatcaatt 57  Q
    |||| ||| ||||||||||||| || ||||||| ||||||||||||||||||||||    
T  45390216 cttacctcggagttcttcagatcagtttccaccaattccactcctgccaatcaatt 45390271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 734430 - 734540
Alignment:
Q  395 tttacctcttttttcttcttctcttcaggtgcagccttatcttcctcgacaattttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 494  Q
    |||||||| | |||||||| |||||||||||||||||| ||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  734430 tttacctcatctttcttctcctcttcaggtgcagccttctcttcctcagcaggtttttcctcctcaggagcaattgggatcggagaaagaagctcaacct 734529  T
Q  495 tcctgtgactc 505  Q
    |||| ||||||    
T  734530 tcctatgactc 734540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 209 - 314
Target Start/End: Original strand, 734233 - 734341
Alignment:
Q  209 attgtacagtacccttcattttcagtatccnnnnnnnnatctcctgtgcacaagcttcacaatgcatgtgaattttaacaacag---tcacaatctgagg 305  Q
    |||| |||||||| |||||||| |||||||        || |||| |||||||||||||||||||||||||| |||||  ||||   |||||||||||||    
T  734233 attggacagtaccattcattttaagtatccgttttttgatttcctctgcacaagcttcacaatgcatgtgaactttaaggacagtaatcacaatctgagg 734332  T
Q  306 ctgcaaatg 314  Q
    |||||||||    
T  734333 ctgcaaatg 734341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University