View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_16 (Length: 498)

Name: NF12820_low_16
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_16
NF12820_low_16
[»] chr3 (11 HSPs)
chr3 (38-486)||(33618560-33619008)
chr3 (311-486)||(33609551-33609726)
chr3 (315-486)||(33628040-33628211)
chr3 (349-483)||(33588990-33589124)
chr3 (349-483)||(33596162-33596296)
chr3 (349-483)||(33603293-33603427)
chr3 (326-483)||(33623664-33623821)
chr3 (38-112)||(33609385-33609459)
chr3 (411-480)||(33563471-33563540)
chr3 (42-114)||(33627779-33627851)
chr3 (42-108)||(33622758-33622824)
[»] chr1 (2 HSPs)
chr1 (182-240)||(19908043-19908102)
chr1 (191-236)||(43240391-43240437)
[»] chr7 (1 HSPs)
chr7 (191-237)||(38900181-38900227)
[»] chr4 (1 HSPs)
chr4 (192-237)||(51811290-51811335)
[»] chr6 (1 HSPs)
chr6 (9-45)||(26892553-26892589)


Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 38 - 486
Target Start/End: Original strand, 33618560 - 33619008
Alignment:
Q  38 attgttgatcgaattggtagaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaactaaacctatctatccttttgttag 137  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33618560 attgttgatcgaattggtcgaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaactaaacctatctatctttttgttag 33618659  T
Q  138 ctaatatattttgtgtccctatgaaatatatttttaagttgtttaacatcattgcgtcattttattcatgcagccgactcacttagtgggataaggcttg 237  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33618660 ttaatatattttgtgtccctatgaaatatatttttaagttgtttaacatcattgcgtcattttattcatgcagccaactcacttagtgggataaggcttg 33618759  T
Q  238 attattgcttttaggctatttaacattttttatttagttccacttgttactaattaaaatactttgtctcaaaaatgtgaagattgctgtgtccattgtc 337  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  33618760 attattgcttttaagctatttaacattttttatttagttccacttgttactaattaaaatactttgtctcaacaatgtgaagattgctgtgtccattgtc 33618859  T
Q  338 ctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggtt 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33618860 ctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggtt 33618959  T
Q  438 ggtcatggggtcctttaacatggcttattccaagtgagattttcccagt 486  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33618960 ggtcatggggtccattaacatggcttattccaagtgagattttcccagt 33619008  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 311 - 486
Target Start/End: Original strand, 33609551 - 33609726
Alignment:
Q  311 aatgtgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctat 410  Q
    |||||||||||||||||||||||||| || ||||||||| |||||||||| |||||||| |||||||||||||| ||||||||| | |||||||||||||    
T  33609551 aatgtgaagattgctgtgtccattgtgctagcagtggtgtctggtgttgacggtacaaacgacatatccaaggggaatgcaatattagtattggtgctat 33609650  T
Q  411 tgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagt 486  Q
    | ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33609651 tatgtttatactctgctggttttggttggtcatggggtcctctaacatggcttattccaagtgagattttcccagt 33609726  T

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Target: chr3; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 315 - 486
Target Start/End: Original strand, 33628040 - 33628211
Alignment:
Q  315 tgaagattgctgtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtg 414  Q
    ||||| |||| ||||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||| ||||    
T  33628040 tgaagcttgcggtgtccattgtgctagcagtggtaactggtgttgatggtacaaatgacatatcaaagggcaatgcaatattggtattggtactaatgtg 33628139  T
Q  415 tttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttcccagt 486  Q
    ||||||  |||| |||||||||| ||| ||| ||||| |||||||||| ||||||| ||||||||| |||||    
T  33628140 tttctatgctgcgggttttggtttgtcgtggagtcctctaacatggctaattccaactgagatttttccagt 33628211  T

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Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 33588990 - 33589124
Alignment:
Q  349 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt 448  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| | ||||||||||||||||| ||||||    
T  33588990 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt 33589089  T
Q  449 cctttaacatggcttattccaagtgagattttccc 483  Q
    ||  | || ||||| ||||||||||| ||||||||    
T  33589090 ccactcacctggctaattccaagtgaaattttccc 33589124  T

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Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 33596162 - 33596296
Alignment:
Q  349 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt 448  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| | ||||||||||||||||| ||||||    
T  33596162 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt 33596261  T
Q  449 cctttaacatggcttattccaagtgagattttccc 483  Q
    ||  | || ||||| ||||||||||| ||||||||    
T  33596262 ccactcacctggctaattccaagtgaaattttccc 33596296  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 349 - 483
Target Start/End: Original strand, 33603293 - 33603427
Alignment:
Q  349 gactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctgcaggttttggttggtcatggggt 448  Q
    |||||||||||||||||||||| |||| || ||||| ||||||| | ||||||||||  || | ||||||||| | ||||||||||||||||| ||||||    
T  33603293 gactggtgttgatggtacaaagcacatgtcaaagggaaatgcaacattggtattggttttactatgtttctacgccgcaggttttggttggtcttggggt 33603392  T
Q  449 cctttaacatggcttattccaagtgagattttccc 483  Q
    ||  | || ||||| ||||||||||| ||||||||    
T  33603393 ccactcacctggctaattccaagtgaaattttccc 33603427  T

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Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 326 - 483
Target Start/End: Original strand, 33623664 - 33623821
Alignment:
Q  326 gtgtccattgtcctggcagtggtgactggtgttgatggtacaaaggacatatccaagggcaatgcaatagtggtattggtgctattgtgtttctactctg 425  Q
    |||| |||||| ||| |||||||  ||||||||||||||||||| |||||||| ||||||||||||||| || ||||||| ||| | |||||||   |||    
T  33623664 gtgttcattgtgctgacagtggttcctggtgttgatggtacaaatgacatatcaaagggcaatgcaatattgatattggtactaatatgtttctgtgctg 33623763  T
Q  426 caggttttggttggtcatggggtcctttaacatggcttattccaagtgagattttccc 483  Q
    | ||||| | || ||| ||| | ||| |||||||||| ||||||| ||||||||||||    
T  33623764 cgggtttagatttgtcgtggagccctctaacatggctaattccaactgagattttccc 33623821  T

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Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 33609385 - 33609459
Alignment:
Q  38 attgttgatcgaattggtagaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaa 112  Q
    |||||||||||| ||||| |||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  33609385 attgttgatcgatttggtcgaagattcctgttcataactgggggtattatgatgtttgtctgcttggtaagcgaa 33609459  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 480
Target Start/End: Original strand, 33563471 - 33563540
Alignment:
Q  411 tgtgtttctactctgcaggttttggttggtcatggggtcctttaacatggcttattccaagtgagatttt 480  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  |||| | ||||||||||| |||||    
T  33563471 tgtgtttctactctgcaggttttggttggtcatggggtcctctattatggataattccaagtgaaatttt 33563540  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 33627779 - 33627851
Alignment:
Q  42 ttgatcgaattggtagaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaagcgaact 114  Q
    |||||||| ||||| ||||||||||||||||  ||||||| ||||| ||| |||||||||||||||| |||||    
T  33627779 ttgatcgatttggtcgaagattcttgttcattactgggggtattatcatgtttgtctgcttggtaagtgaact 33627851  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 33622758 - 33622824
Alignment:
Q  42 ttgatcgaattggtagaagattcttgttcatatctgggggaattatgatgcttgtctgcttggtaag 108  Q
    ||||| || ||||| ||||||||||||||||| | |||||  |||||||| |||||||||| |||||    
T  33622758 ttgatagatttggtcgaagattcttgttcataaccgggggtgttatgatgtttgtctgctttgtaag 33622824  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 19908102 - 19908043
Alignment:
Q  182 aacatcattgcgtcattttattcatgcagccgactc-acttagtgggataaggcttgatt 240  Q
    ||||| ||||||| ||||||| |||| ||||||| | |||||||||||||||||||||||    
T  19908102 aacattattgcgtaattttatccatgtagccgaccccacttagtgggataaggcttgatt 19908043  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 236
Target Start/End: Complemental strand, 43240437 - 43240391
Alignment:
Q  191 gcgtcattttattcatgcagccgac-tcacttagtgggataaggctt 236  Q
    ||||||||| ||||||| ||||||| |||||||||||||||||||||    
T  43240437 gcgtcatttgattcatgtagccgacctcacttagtgggataaggctt 43240391  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 38900181 - 38900227
Alignment:
Q  191 gcgtcattttattcatgcagccgactcacttagtgggataaggcttg 237  Q
    ||||||||| || |||| ||||||| |||||||||||||||||||||    
T  38900181 gcgtcatttgatccatgtagccgacccacttagtgggataaggcttg 38900227  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 51811335 - 51811290
Alignment:
Q  192 cgtcattttattcatgcagccgactcacttagtgggataaggcttg 237  Q
    |||||||| || |||| ||||||| |||||||||||||||||||||    
T  51811335 cgtcatttgatccatgtagccgacccacttagtgggataaggcttg 51811290  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 26892589 - 26892553
Alignment:
Q  9 ttattcgggttcattggcagaagctttggattgttga 45  Q
    |||||||||||||||| |||||||||| |||||||||    
T  26892589 ttattcgggttcattgtcagaagcttttgattgttga 26892553  T

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