View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_17 (Length: 483)
Name: NF12820_low_17
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Complemental strand, 37600928 - 37600466
Alignment:
| Q |
1 |
agcaaaagaaaacttaagcaaacttacaaacatgttgaacaacaaaagaaatataatttcaaagacaaattaaatgttttacctttttacccgtagccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37600928 |
agcaaaagaaaacttaagcaaacttacaaacatgttgaacaacaaaagaaatataatttcaaagacaaattaaatgttttacctttttacccgtagccat |
37600829 |
T |
|
| Q |
101 |
caaaattc-gagaaaacaaaatcagtagcacaacacatcaatgagagtgaaaagattgaactccaacacaacaccatattgaactcaaaacagattaaca |
199 |
Q |
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| T |
37600828 |
caaaattcagagaaaacaaaatcagtagcacaacacatcaatgagagtgaaaagattgaactccaacacaacaccatattgaactcaaaacagattaaca |
37600729 |
T |
|
| Q |
200 |
tcaacataatacaatgcacacagactccttgatgaccaacgacgacgtctctgttaccaacgccggtgaatactaccagattttagatagagagtgagga |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37600728 |
tcaacataatacaatgcacacagactccatgatgaccaacgacgacgtctctgttaccaacgccggtgaatactaccagattttagatagagagtgagga |
37600629 |
T |
|
| Q |
300 |
cgaacggatctccatgatgacggccggtggcgtacctcaacgtcgggggaaagaagaggggcagcgcggcggtggtcggcggttgatagtggcgagaggc |
399 |
Q |
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|||||||||||||||||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
37600628 |
cgaacggatctccatgatgattgccggcgacgtacctcaacgtc-ggggaaagaagaggggcagcgcggcggtggttggtggttgatagtggcgagaggc |
37600530 |
T |
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| Q |
400 |
aaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
463 |
Q |
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| T |
37600529 |
aaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
37600466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 5745366 - 5745412
Alignment:
| Q |
42 |
acaaaagaaatataatttcaaagacaaattaaatgttttaccttttt |
88 |
Q |
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| T |
5745366 |
acaaaagaaatatagtttcaaagggaaattaaatgttttaccttttt |
5745412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 27660794 - 27661255
Alignment:
| Q |
1 |
agcaaaagaaaacttaagcaaacttacaaacatgttgaacaacaaaagaaatataatttcaaagacaaattaaatgttttacctttttacccgtagccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
27660794 |
agcaaaagaaaacttaagcaaacttacaaacatgttcaataacaaaagaaatataatttcaaaggcaaattaattgttttacctttttactcgtagccat |
27660893 |
T |
|
| Q |
101 |
caaaattc-gagaaaacaaaatcagtagcacaacacatcaatgagagtgaaaagattgaactccaacacaacac-----catattgaactcaaaacagat |
194 |
Q |
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| T |
27660894 |
caaaatgcagagaaaacaaaatcagtagcacaacacatcaatgagaatgaaaatattgaactccaacacaacacaacaccatattcaactcaaaacagat |
27660993 |
T |
|
| Q |
195 |
t-aacatcaacataatacaatgcacacagactccttgatgaccaacgacgacgtctctgttaccaacgccggtgaatactaccagattttagatagagag |
293 |
Q |
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| |||||||||||||||||||||||||||||||| ||| |||| ||| || ||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
27660994 |
ttaacatcaacataatacaatgcacacagactccatgacgaccggtgacaacatctctgttaccaacgccggtgaatactaccatatttcagatagagag |
27661093 |
T |
|
| Q |
294 |
tgaggacgaacggatctccatgatgacggccggtggcgtacctcaacgtcgggggaaagaagaggggcagcgcggcggtggtcggcggttgatagtggcg |
393 |
Q |
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|||||||||||||||||||||||||| |||| | | |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |
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| T |
27661094 |
tgaggacgaacggatctccatgatgatggccagcgacgtacctcaacgtcgggggaaaaaagaggggcagcgcggtggt-------ggttgatagtggcg |
27661186 |
T |
|
| Q |
394 |
agaggcaaagaaacgatggtggtggtgataaaggacaaagtcatgggggagaaaggatctggaaggtgtg |
463 |
Q |
| |
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||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
27661187 |
agaggcagagaaacgatggtggtggtgataggggacagagtcatgggggagaaaggat-tggaaggtgtg |
27661255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 4096713 - 4096611
Alignment:
| Q |
239 |
cgacgacgtctctgttaccaacgccggtgaatactaccagattttagat--agagagtgaggacgaacggatctccatgatgacggccggtggcgtacct |
336 |
Q |
| |
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|||||||||||| ||||||||||| ||||||||| |||||||| || |||||||||| ||| |||| | |||||||||| |||||||| ||||||| |
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| T |
4096713 |
cgacgacgtctccgttaccaacgctggtgaatacgaccagattccgaatggagagagtgagaacgcacggttttccatgatgatggccggtgacgtacct |
4096614 |
T |
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| Q |
337 |
caa |
339 |
Q |
| |
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||| |
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| T |
4096613 |
caa |
4096611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 30265639 - 30265571
Alignment:
| Q |
20 |
aaacttacaaacatgttgaacaacaaaagaaatataatttcaaagacaaattaaatgttttaccttttt |
88 |
Q |
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|||||| |||||||||| || ||||| |||||||| |||||||| ||||||||| ||||||||||| |
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| T |
30265639 |
aaactttcaaacatgtttaatgacaaacgaaatatagtttcaaagggaaattaaatagtttaccttttt |
30265571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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