View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_19 (Length: 472)

Name: NF12820_low_19
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_19
NF12820_low_19
[»] chr2 (6 HSPs)
chr2 (218-389)||(12250630-12250796)
chr2 (19-60)||(12258549-12258590)
chr2 (22-60)||(16661960-16661998)
chr2 (22-60)||(14703570-14703608)
chr2 (19-56)||(7542385-7542422)
chr2 (19-59)||(11999553-11999593)
[»] chr7 (13 HSPs)
chr7 (22-58)||(8590800-8590836)
chr7 (22-58)||(29581811-29581847)
chr7 (22-58)||(8382846-8382882)
chr7 (22-58)||(29577642-29577678)
chr7 (24-59)||(8659527-8659562)
chr7 (22-56)||(8585678-8585712)
chr7 (22-56)||(8628694-8628728)
chr7 (22-60)||(17268101-17268139)
chr7 (22-55)||(7877706-7877739)
chr7 (19-56)||(8654609-8654646)
chr7 (22-58)||(8538198-8538234)
chr7 (24-60)||(10494342-10494378)
chr7 (24-60)||(13333424-13333460)
[»] chr1 (3 HSPs)
chr1 (24-60)||(15595198-15595234)
chr1 (22-59)||(34466762-34466799)
chr1 (24-60)||(4678526-4678562)
[»] chr4 (3 HSPs)
chr4 (22-60)||(30775414-30775452)
chr4 (308-384)||(11120636-11120715)
chr4 (28-60)||(35132616-35132648)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 218 - 389
Target Start/End: Complemental strand, 12250796 - 12250630
Alignment:
Q  218 ctcaccaagcaaaactgaagtttgttttagaaaacattgtattttcaatttagttagctataaatatttaccttgctttcgttagcatttcatttcatcc 317  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||||||    ||||||||||||||||||| ||| |||||||| ||||||||||    
T  12250796 ctcaccaagcaaaactgaattttgttttagaaaatattgtattctcaatttag----ctataaatatttaccttgcattccttagcatt-catttcatcc 12250702  T
Q  318 acacttgcttttctattggttttctttccgttaaaccatttacactttccacaaaatcattcatggcgtggg 389  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12250701 acacttgcttttctattggttttctttcagttaaaccatttacactttccacaaaatcattcatggcgtggg 12250630  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 12258590 - 12258549
Alignment:
Q  19 agtagagacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12258590 agtagagacacatcaaaagtgccaccaccaagatcaaagaca 12258549  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 16661998 - 16661960
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  16661998 agagacacatcaaaagtcccaccaccaagatcaaagaca 16661960  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 14703570 - 14703608
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  14703570 agagacacgtcaaaagtaccaccaccaagatcaaagaca 14703608  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 7542385 - 7542422
Alignment:
Q  19 agtagagacacatcaaaagtgccaccaccaagatcaaa 56  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  7542385 agtaaagacacatcaaaagtgccaccgccaagatcaaa 7542422  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 11999553 - 11999593
Alignment:
Q  19 agtagagacacatcaaaagtgccaccaccaagatcaaagac 59  Q
    |||| ||||| ||||||||||||||| ||||||||||||||    
T  11999553 agtatagacaaatcaaaagtgccaccgccaagatcaaagac 11999593  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 8590800 - 8590836
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaaga 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  8590800 agagacacatcaaaagtgccaccaccaagatcaaaga 8590836  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 29581847 - 29581811
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaaga 58  Q
    |||||||||||||||||||||||||||||||||||||    
T  29581847 agagacacatcaaaagtgccaccaccaagatcaaaga 29581811  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 8382882 - 8382846
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaaga 58  Q
    ||||||||||||||||| |||||||||||||||||||    
T  8382882 agagacacatcaaaagttccaccaccaagatcaaaga 8382846  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 29577678 - 29577642
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaaga 58  Q
    |||||||||||||| ||||||||||||||||||||||    
T  29577678 agagacacatcaaaggtgccaccaccaagatcaaaga 29577642  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 59
Target Start/End: Original strand, 8659527 - 8659562
Alignment:
Q  24 agacacatcaaaagtgccaccaccaagatcaaagac 59  Q
    ||||||||||||||| ||||||||||||||||||||    
T  8659527 agacacatcaaaagtaccaccaccaagatcaaagac 8659562  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 8585712 - 8585678
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaa 56  Q
    ||||||||||||||||| |||||||||||||||||    
T  8585712 agagacacatcaaaagtcccaccaccaagatcaaa 8585678  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 8628694 - 8628728
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaa 56  Q
    ||||||||||||||||| |||||||||||||||||    
T  8628694 agagacacatcaaaagtcccaccaccaagatcaaa 8628728  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 17268101 - 17268139
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  17268101 agagacacatcaaaagtcccaccaccaaggtcaaagaca 17268139  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 7877739 - 7877706
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaa 55  Q
    ||||||||||| ||||||||||||||||||||||    
T  7877739 agagacacatcgaaagtgccaccaccaagatcaa 7877706  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 8654609 - 8654646
Alignment:
Q  19 agtagagacacatcaaaagtgccaccaccaagatcaaa 56  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  8654609 agtatagacacatcaaaagtaccaccaccaagatcaaa 8654646  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 58
Target Start/End: Original strand, 8538198 - 8538234
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaaga 58  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  8538198 agagatacatcaaaagttccaccaccaagatcaaaga 8538234  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 10494378 - 10494342
Alignment:
Q  24 agacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  10494378 agacacatcaaaagtaccaccacccagatcaaagaca 10494342  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 13333460 - 13333424
Alignment:
Q  24 agacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  13333460 agacacatcaaaagtaccaccacccagatcaaagaca 13333424  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 15595198 - 15595234
Alignment:
Q  24 agacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    |||||||||||||||||||||||||||||||||||||    
T  15595198 agacacatcaaaagtgccaccaccaagatcaaagaca 15595234  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 34466799 - 34466762
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaagac 59  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  34466799 agagacacatcaaaagtcccaccaccaaggtcaaagac 34466762  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 4678562 - 4678526
Alignment:
Q  24 agacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  4678562 agacacatcaaaagtaccaccaccaaggtcaaagaca 4678526  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 30775414 - 30775452
Alignment:
Q  22 agagacacatcaaaagtgccaccaccaagatcaaagaca 60  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  30775414 agagacacatcaaaagtcccaccaccaagatcaaagaca 30775452  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 384
Target Start/End: Complemental strand, 11120715 - 11120636
Alignment:
Q  308 catttcatccacacttgcttttctattggttttctt---tccgttaaaccatttacactttccacaaaatcattcatggc 384  Q
    ||||||||||||||||  |||||||| | |||||||   ||  ||||||||| |||| |||| |||||||||||||||||    
T  11120715 catttcatccacacttatttttctatagcttttcttctttcatttaaaccatatacagtttctacaaaatcattcatggc 11120636  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 60
Target Start/End: Original strand, 35132616 - 35132648
Alignment:
Q  28 acatcaaaagtgccaccaccaagatcaaagaca 60  Q
    |||||||||||||||||||||||||| ||||||    
T  35132616 acatcaaaagtgccaccaccaagatcgaagaca 35132648  T

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