View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_20 (Length: 437)
Name: NF12820_low_20
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_20 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 437
Target Start/End: Original strand, 26892149 - 26892570
Alignment:
| Q |
16 |
actgttcttttatatgtttttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaacaaaatcgaaagaacatacaatgaaggaagtgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26892149 |
actgttcttttatatgtttttatcatcaaaacttaagagtaattgtttaaaactcatttttgtttaacaaaatcgaaagaacatacaatgaaggaagtgg |
26892248 |
T |
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| Q |
116 |
aaaaaacatcggtagaaaacaaagctaatgaaggccacaaaactaaacaatcaaaagtacaatcactcaagatagaaaatgaagcatgaagcatcaatac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26892249 |
aaaaaacatcggtagaaaacaaagctaatgaaggccacaaaactaaacaatcaaaagtacaatcactcaagatagaaaatgaagcatgaagcatcaatac |
26892348 |
T |
|
| Q |
216 |
acatgttgtcctgaaggagacatagcgcatcagatgaccaacaatttaaactaaaaaatgaccaattatcattgtttatggctagtgtaaaacaacaata |
315 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26892349 |
acatgttgtcctgaaggagacatagggcatcagatgaccaacaatttaaactaaaaaatgaccaattatcattgtttatggctagtgtaaaacaacaata |
26892448 |
T |
|
| Q |
316 |
ctaaattcaacaacatcaaatcaattaagatatatcatcaagcaagcagcttgtaaaccacattcaagttgatgttcatttgctacatgtctgcgaacca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26892449 |
ctaaattcaacaacatcaaatcaattaagatatatcatcaagcaagcagcttgtaaaccacattcaagttgatgttcatttgctacatgtctgcgaacca |
26892548 |
T |
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| Q |
416 |
taggtcaacaatccaaagcttc |
437 |
Q |
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| T |
26892549 |
taggtcaacaatcaaaagcttc |
26892570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 16742652 - 16742692
Alignment:
| Q |
35 |
ttatcatcaaaacttcagagtaattgtttaaaactcatttt |
75 |
Q |
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| T |
16742652 |
ttatcatcaaaacttaagagacattgtttaaaactcatttt |
16742692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 7144625 - 7144558
Alignment:
| Q |
18 |
tgttcttttatatgtttttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaacaa |
85 |
Q |
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| T |
7144625 |
tgttctttcatatattgttctcatcaaaacttcagagtcattgtttaaaactcattttggtttaacaa |
7144558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 9124644 - 9124715
Alignment:
| Q |
18 |
tgttcttttatatgtttttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaacaaaatc |
89 |
Q |
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| T |
9124644 |
tgttcttttatacattggtatcgtcaaaactttagagccattgtttaaaactcattttagttcaacaaaatc |
9124715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 12129167 - 12129106
Alignment:
| Q |
23 |
ttttatatgtttttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaaca |
84 |
Q |
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|||||||| || ||||||||||||||| |||| ||||| ||||||||||||||||| |||| |
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| T |
12129167 |
ttttatattttattatcatcaaaacttaagagggattgtataaaactcattttagttcaaca |
12129106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 10220938 - 10220889
Alignment:
| Q |
35 |
ttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaaca |
84 |
Q |
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|||| ||||||||||||||| ||||| ||||||||||||| |||||||| |
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| T |
10220938 |
ttattatcaaaacttcagaggcattgtataaaactcattttggtttaaca |
10220889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 1616052 - 1615984
Alignment:
| Q |
18 |
tgttcttttatatgtttttatcatcaaaacttcagagtaattgtttaaaactcattttagtttaacaaa |
86 |
Q |
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|||||||||||| || |||| |||||||||||||| |||||| |||||||||||| ||| |||||| |
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| T |
1616052 |
tgttcttttatactttgttattatcaaaacttcagatgcattgttcaaaactcattttggttcaacaaa |
1615984 |
T |
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