View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_23 (Length: 417)
Name: NF12820_low_23
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 31304765 - 31304365
Alignment:
| Q |
1 |
tagtttaggaacactaatcttaacatcatacgcaatcaacgtagccaatgctgctcccaaactatgaccagttatggtcaaactcaattcttcttgactg |
100 |
Q |
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| T |
31304765 |
tagtttgggaacactaatcttaacatcatacgcaatcaacgtagccaatgctgctcccaaactatgtccagttatggtcaaactcaattcttcttgacgg |
31304666 |
T |
|
| Q |
101 |
tatatttgattgatccttaaaatctcttgtttcaccattttttgcatactttctaacgatgattttgcatgatttgatgaggtatagagattcaagaatc |
200 |
Q |
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| T |
31304665 |
tatatttgattgatccttaaaatctcttgtttcaccattttttgcatactttctaacgatgattttgcataatttgatgaggtatagagattcaagaatc |
31304566 |
T |
|
| Q |
201 |
cactttctaccatggtccccacaccttttctctcatcattaatgttgtggttgcatgggatagaaaagttggtgagtgtggcacgaaagttttcaagcca |
300 |
Q |
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| T |
31304565 |
cactttctaccatggtccccacaccttttctctcatcattaatgttgtggttgcatgggatagaaaagttggtgagtgtggcacgaaagttttcaagcca |
31304466 |
T |
|
| Q |
301 |
ttctaaacatgtgcatgttcctctaatagcaataaccacatcacgccgtccaagtcttttgatttcttccttgttatcacacacagctacgtatccaata |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31304465 |
ttctaaacatgtgcatgttcctctaatagcaataaccacatcacgccgtccaagtcttttgatttcttccttgttatcacacacagctacgtatccaata |
31304366 |
T |
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| Q |
401 |
t |
401 |
Q |
| |
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| T |
31304365 |
t |
31304365 |
T |
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