View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_28 (Length: 371)
Name: NF12820_low_28
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 20 - 360
Target Start/End: Complemental strand, 51154239 - 51153899
Alignment:
| Q |
20 |
ggggacatgtgaagtatttgacttcggaaagaatcatcttctgagtttcatgagactccaacatgattttccacgattgtgttaggctgcatttggaaaa |
119 |
Q |
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| T |
51154239 |
ggggacatgtgaagtatttgacttcggaaagaatcatcttctgagtttcatgagactccaacatgattttccacgattgtgttaggctgcatttggaaaa |
51154140 |
T |
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| Q |
120 |
tggaaaatgataaatcaatgaattcaaaactatttagtctccttttagaatgaagttctatattatctcaccctttcaatagttcaacaatttgaggctg |
219 |
Q |
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| T |
51154139 |
tggaaaatgataaatcaatgaattcaaaactatttagtctccttttagaatgaagttctatattatctcaccctttcaatagttcaacaatttgaggctg |
51154040 |
T |
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| Q |
220 |
taattcttcgtctctcattttctgaattctctttgagatcgactctgcacgtcgaattgcaaccaagatcccagcatacagatctttcatatcagctcta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51154039 |
taattcttcgtctctcattttctgaattctctttgagatcgactctgcacgtcgaattgcaaccaagatcccagcatacagatctttcatatcagctcta |
51153940 |
T |
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| Q |
320 |
gtcttgtccatgcttaattcatcatctcctctaacattctt |
360 |
Q |
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| T |
51153939 |
gtcttgtccatgcttaattcatcatctcctctaacattctt |
51153899 |
T |
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