View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_31 (Length: 334)
Name: NF12820_low_31
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_31 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 334
Target Start/End: Complemental strand, 24059257 - 24058941
Alignment:
| Q |
18 |
aagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatgg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059257 |
aagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatgg |
24059158 |
T |
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| Q |
118 |
tctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059157 |
tctgttcactcgacgctcctccaagcacttccaagccagctctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatt |
24059058 |
T |
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| Q |
218 |
tcatgaaaagtaccctttttattgcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataa |
317 |
Q |
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| T |
24059057 |
tcatgaaaagtgccctttttatggcagcttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataa |
24058958 |
T |
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| Q |
318 |
cttcaagcaaccccacc |
334 |
Q |
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||||||||||| ||||| |
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| T |
24058957 |
cttcaagcaacaccacc |
24058941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 46 - 333
Target Start/End: Original strand, 14670796 - 14671083
Alignment:
| Q |
46 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
145 |
Q |
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| T |
14670796 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14670895 |
T |
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| Q |
146 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
245 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
14670896 |
ttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14670995 |
T |
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| Q |
246 |
ttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaaccccac |
333 |
Q |
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| T |
14670996 |
ttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccac |
14671083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 46 - 333
Target Start/End: Complemental strand, 14705207 - 14704920
Alignment:
| Q |
46 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
145 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
14705207 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14705108 |
T |
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| Q |
146 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
245 |
Q |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
14705107 |
ttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14705008 |
T |
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| Q |
246 |
ttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaaccccac |
333 |
Q |
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| T |
14705007 |
ttaatgcccacaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccac |
14704920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 46 - 333
Target Start/End: Complemental strand, 14685517 - 14685230
Alignment:
| Q |
46 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
145 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
14685517 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataacacataccccattgatggtctgttctccggacgctcctccaagcac |
14685418 |
T |
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| Q |
146 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
245 |
Q |
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| T |
14685417 |
ttccaagccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14685318 |
T |
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| Q |
246 |
ttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaaccccac |
333 |
Q |
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| T |
14685317 |
ttaatgcccacattgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccac |
14685230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 46 - 333
Target Start/End: Complemental strand, 30731024 - 30730737
Alignment:
| Q |
46 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
145 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
30731024 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
30730925 |
T |
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| Q |
146 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
245 |
Q |
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||||| ||||||| |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
30730924 |
ttccatgccaactataaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
30730825 |
T |
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| Q |
246 |
ttaatgcccaaaatgccaaattcatctgctgcgttggaagggcatcatctagagcaggcttcccacatataacttcaagcaaccccac |
333 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||||||| |||| |||| |
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| T |
30730824 |
ttaatgcccgcaatgccaaattcatctgttgcgttggaagggcatcatctaaagcaggttttccacatataacttcaatcaacaccac |
30730737 |
T |
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