View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_34 (Length: 320)
Name: NF12820_low_34
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 54498143 - 54498452
Alignment:
| Q |
1 |
ttaaagtagtgtcgtccctttgctgcaatcaaagtatcttgataactcataaaactactgttaaagattgcagatttgtctccgtagaaagcagctgaca |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54498143 |
ttaaagtagtgtcgtccctttgctgcaaacaaagtatcttgataactcataaaactactgttaaagattgcagatttgtctccgtagaaagcagctgaca |
54498242 |
T |
|
| Q |
101 |
atgcctgttcgatatcatctgaacccccttccaaattatatgagttctgcaatcatacaataatc----tgttatattaactaaatacaaatatgggaga |
196 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54498243 |
atgcctgttcgatatcatctgaacctccttccaaattatatgagttctgcaatcatacaataattaatgtgttatattaactaaatacaaatatgggaga |
54498342 |
T |
|
| Q |
197 |
gatatcnnnnnnnnnnttgtattgatttttcttgattttaccttgaaagtaatgtcactcacaatcacattagttgcgaatgaactgaatgtagatcccc |
296 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54498343 |
gatatcaaaaaaaaaattgtattgatttttcttgattttaccttgaaagtaatgtcactcacaatcacattagttgcgaatgaactgaatgtagatcccc |
54498442 |
T |
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| Q |
297 |
aatctgatgt |
306 |
Q |
| |
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|||||||||| |
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| T |
54498443 |
aatctgatgt |
54498452 |
T |
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