View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_35 (Length: 308)
Name: NF12820_low_35
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 37092288 - 37092578
Alignment:
| Q |
1 |
ctaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcgagttatcattagtgacagattcaatctgtggtcctggaaactgtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37092288 |
ctaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcaagttatcattagtgacagattcaatctgtggtcctggaaactgtcc |
37092387 |
T |
|
| Q |
101 |
atttatcaatatcccctgccatttcataaaccaannnnnnnnnnnnnnnnnnnnnnnnnttcacatttttacaaaataagaatcacaaagaaaaataatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
37092388 |
atttatcaatatcccctgccatttcataaaccaaatatatatatatattcactatatatttcacatttttaaaaaataagaatcacaaagaaaaataatt |
37092487 |
T |
|
| Q |
201 |
tagagcacaaatataacctgttgtttaactccaagaggataaatatctccataggtaacattccaagtatagaacctataagggtcttctc |
291 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37092488 |
tagaacacaaatataacctgttgtttaactccaagaggataaatatctccataggtaacattccaagtatagaacctataagggtcttctc |
37092578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 17345640 - 17345507
Alignment:
| Q |
1 |
ctaaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcgagttatcattagtgacagattcaatctgtggtcctggaaactgtcc |
100 |
Q |
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||||||||||||| |||||||||| |||||||||||| |||||| | | |||| | ||||||||||| || || ||||||||||| || ||||| ||||| |
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| T |
17345640 |
ctaaccaagaaatgaggaaaggttcatccaagctattaaaaacattgataatcaaattatcattagtcactgactcaatctgtggcccaggaaattgtcc |
17345541 |
T |
|
| Q |
101 |
atttatcaatatcccctgc-catttcataaacca |
133 |
Q |
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| T |
17345540 |
atttatcaaaatcccctgcacatttcacaaacca |
17345507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 133
Target Start/End: Original strand, 17138878 - 17139010
Alignment:
| Q |
2 |
taaccaagaaataaggaaaggttgatccaagctattgaaaacactaacaatcgagttatcattagtgacagattcaatctgtggtcctggaaactgtcca |
101 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||| ||||||||| | | |||| | ||||||||||| || || ||||||||||| |||||||| | |||| |
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| T |
17138878 |
taaccaagaaatgaggaaaggttcatccaagctgttgaaaacattgataatcaaattatcattagtcactgactcaatctgtggccctggaaattttcca |
17138977 |
T |
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| Q |
102 |
tttatcaatatcccctgc-catttcataaacca |
133 |
Q |
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|||||||| ||||||||| ||||||| |||||| |
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| T |
17138978 |
tttatcaaaatcccctgcacatttcacaaacca |
17139010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 291
Target Start/End: Original strand, 17139161 - 17139236
Alignment:
| Q |
216 |
acctgttgtttaactccaagaggataaatatctccataggtaacattccaagtatagaacctataagggtcttctc |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||| ||||||||||| ||||||| |
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|
| T |
17139161 |
acctgttgtttaactccaagtggataaatatcaccatatgtaacattccaattataaaacctataaggatcttctc |
17139236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 17345338 - 17345263
Alignment:
| Q |
216 |
acctgttgtttaactccaagaggataaatatctccataggtaacattccaagtatagaacctataagggtcttctc |
291 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||| | || ||||||||||| ||||||| |
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|
| T |
17345338 |
acctgttgtttaactccaagtggataaatatctccatatgtaacattccaattgtaaaacctataaggatcttctc |
17345263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 55294155 - 55294082
Alignment:
| Q |
216 |
acctgttgtttaactccaagaggataaatatctccataggtaacattccaagtatagaacctataagggtcttc |
289 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| ||||| || | |||||||| |||| |||||||||||||| |
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| T |
55294155 |
acctgttgtttaacaccaagaggatagatatcaccatatgtgattttccaagtgaagaatctataagggtcttc |
55294082 |
T |
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