View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_38 (Length: 298)
Name: NF12820_low_38
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 44 - 276
Target Start/End: Original strand, 32955629 - 32955846
Alignment:
| Q |
44 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
143 |
Q |
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| T |
32955629 |
ccgttgacgagaccataacataaccatcacaatcaaaaacatctacatcgtaaaacattgtcgtacacctacatctacatcatcattttttgtcttcttt |
32955728 |
T |
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| Q |
144 |
ctgttctattatcttaggaatattaagcttatgtcgtcatcatcatcaatatcatcgtaacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
243 |
Q |
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| T |
32955729 |
ctgttctattaacgtaggaatattaagcttatgtc---------------atcatcataacttctaattccaatgcttcatcttgtgtaatcgtgaacaa |
32955813 |
T |
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| Q |
244 |
gacttgtgttgagtctccaagaaaggaaattag |
276 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
32955814 |
gacttgtgttgagtctccaagaaaggaaattag |
32955846 |
T |
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