View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_low_41 (Length: 279)
Name: NF12820_low_41
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 13726175 - 13726449
Alignment:
| Q |
1 |
acacaatcaacagggttgtttgaactttgaagtttatgaagaagctgagaaagtgattttggtccaactttccagaaagtgtctttgtaagattccatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
13726175 |
acacaatcaacagggttgtttgaactttgaagtttatgaagaagctgagaaagtgattttggtccaactttccagaaagtgtctttgtaagattccatgt |
13726274 |
T |
|
| Q |
101 |
tttctgctgatgacattcctccattgtcataaccatctgaaatgctttcagtttgaattgaatttagatcaatgttgttgttgattttgttccaaatgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13726275 |
tttctgctgatgacattcctccattgtcataaccatctgaaatgctttcagtttcaattgaattgagatcaatgttgttgttgattttgttccaaatgga |
13726374 |
T |
|
| Q |
201 |
aatggtgttcactagtgtgatttttactccattttgggataaacgttttgagaattgaagcatagggtttatgtg |
275 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13726375 |
aatggtgttcactagtgttatttttactcctttttgggataaacgtttcgagaattgaagcatagggtttatgtg |
13726449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 275
Target Start/End: Original strand, 13697352 - 13697425
Alignment:
| Q |
202 |
atggtgttcactagtgtgatttttactccattttgggataaacgttttgagaattgaagcatagggtttatgtg |
275 |
Q |
| |
|
|||||||| |||||||||| ||||| ||| |||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13697352 |
atggtgtttactagtgtgacttttagtcctttttggagtaaacgttttgagaattgaagcattgggtttatgtg |
13697425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 13686416 - 13686377
Alignment:
| Q |
240 |
taaacgttttgagaattgaagcatagggtttatgtggcct |
279 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
13686416 |
taaacgttttgagaattgaatcatagggttcatgtggcct |
13686377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University