View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_low_42 (Length: 277)
Name: NF12820_low_42
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 26272509 - 26272762
Alignment:
| Q |
4 |
ttggtgagaagtggttgaccatgaacgagccttttgatactggttttcttgatggtgttcctgttgtttatgtcatgttgtttacgttgtttaannnnnn |
103 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||| | |
|
|
| T |
26272509 |
ttggtgagaagtggttgaccatgaaggagcttttttatactgattttcttgatggtgttcttgttgtttatgtcctgttgtttacgtcgttt-atttttt |
26272607 |
T |
|
| Q |
104 |
nnncgtggcctctccttcagatcccgttttgggttgtttttcttgttcctacggcggcagagagttggtcagtggtggcgccgctgttgattggtggcag |
203 |
Q |
| |
|
| ||| | ||||||||||||| |||||||||||||||||||||||||||||||| | ||||| || ||||| | || || |||| |||||||||| |
|
|
| T |
26272608 |
tccctgggcttttccttcagatcccattttgggttgtttttcttgttcctacggcggcggggagttcgttggtggtagtgctgccgttgtttggtggcag |
26272707 |
T |
|
| Q |
204 |
caaaatcactgttgtttcgtcggagtcgaatttgtggtttgtgtttgttgggttt |
258 |
Q |
| |
|
| | |||||| | |||| ||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
26272708 |
cgcagtcactgctatttcatcggagtcggattggtggtttatgtttgttgggttt |
26272762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 259
Target Start/End: Complemental strand, 43712354 - 43712098
Alignment:
| Q |
2 |
ggttggtgagaagtggttgaccatgaacgagccttttgatactggttttcttgatggtgttcctgttgtttatgtcatgttgtttacgttgtttaannnn |
101 |
Q |
| |
|
||||||||||||||||||||||||||| | || | || |||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||| |
|
|
| T |
43712354 |
ggttggtgagaagtggttgaccatgaaggtgcttatttatactgattttcttgatggtgttcttgttgtttatgtcctgttgtttacgtcgtttaatttt |
43712255 |
T |
|
| Q |
102 |
nnnnncgtggcctct-ccttcagatcccgttttgggttgtttttcttgttcctacggcggcagagagttggtcagtggtggcgccgctgttgattggtgg |
200 |
Q |
| |
|
| ||| |||| |||||| ||||| ||||||||||||||||||| |||||||||||| | ||||| ||| ||||| | ||||| |||| ||||||| |
|
|
| T |
43712254 |
ttc--cctgggctcttccttcatatcccattttgggttgtttttcttgctcctacggcggcggggagttagtcggtggtagtgccgccgttgtttggtgg |
43712157 |
T |
|
| Q |
201 |
cagcaaaatcactgttgtttcgtcggagtcgaatttgtggtttgtgtttgttgggtttt |
259 |
Q |
| |
|
|||| | |||||| | |||| || |||||| ||||||||||| ||||||||||||||| |
|
|
| T |
43712156 |
cagcgcagtcactgctatttcatcagagtcggatttgtggtttatgtttgttgggtttt |
43712098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 27196415 - 27196491
Alignment:
| Q |
1 |
cggttggtgagaagtggttgaccatgaacgagccttttgatactggttttcttgatggtgttcctgttgtttatgtc |
77 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27196415 |
cggttggtgagaagtggttgactatgaaggagctttttgatactggttttcttgatggtgttccggttgtttatgtc |
27196491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University