View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12820_low_47 (Length: 253)
Name: NF12820_low_47
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_47 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 48170378 - 48170619
Alignment:
| Q |
12 |
acagaacaacatctaccaaaaaacgaagatcaagcccataattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaacgagttaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48170378 |
acagaacaacatctaccaaaaaacgaagatcaagcccataattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaatgagttaa |
48170477 |
T |
|
| Q |
112 |
cnnnnnnnnttaactggagctcattgcagaagagtccagatggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctc |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48170478 |
caaaaaaaattaactggagctcattgcagaagagtccagatggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctc |
48170577 |
T |
|
| Q |
212 |
atgctacttatttcttcatatctttccagcaagttagagaag |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48170578 |
atgctacttatttcttcatatctttccagcaagttagagaag |
48170619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University