View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_48 (Length: 253)

Name: NF12820_low_48
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_48
NF12820_low_48
[»] chr3 (12 HSPs)
chr3 (1-235)||(10364626-10364860)
chr3 (1-235)||(10376674-10376920)
chr3 (143-235)||(10218467-10218558)
chr3 (1-66)||(10076431-10076496)
chr3 (166-235)||(9998159-9998229)
chr3 (166-235)||(10107931-10108001)
chr3 (166-235)||(10229167-10229237)
chr3 (143-177)||(10108543-10108577)
chr3 (174-204)||(10439255-10439285)
chr3 (143-176)||(9998778-9998811)
chr3 (143-176)||(10229783-10229816)
chr3 (166-207)||(10232792-10232833)
[»] chr5 (5 HSPs)
chr5 (143-235)||(26797938-26798029)
chr5 (166-235)||(26802544-26802614)
chr5 (166-235)||(26810094-26810164)
chr5 (166-235)||(26825121-26825191)
chr5 (143-176)||(26825737-26825770)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-68)||(50577-50644)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10364626 - 10364860
Alignment:
Q  1 aagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaagtgcatatagataacttttcttatctataatatgtatcatcc 100  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10364626 aagacttgcttgtgaatgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatagataacttttcttatctataatatgtatcatcc 10364725  T
Q  101 aacagaaaaaataaatgcttgtttgtggacacacattagactaaaggaattggcatctttgaagtttgaatgataaattctactgtggaccatttcaata 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10364726 aacagaaaaaataaatgcttgtttgtggacccacattagactaaagcaattggcatctttgaagtttgaatgataaattctactgtagaccatttcaata 10364825  T
Q  201 tatagtcgattgtggatcaactagtatttgaaaat 235  Q
    |||| ||||||||||||||||||||||||||||||    
T  10364826 tatactcgattgtggatcaactagtatttgaaaat 10364860  T

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Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10376674 - 10376920
Alignment:
Q  1 aagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaag------------tgcatatagataacttttcttatctataa 88  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||            |||||||||||| ||||||||||||||||    
T  10376674 aagactcgcttgtgagtgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatagaagtgcatatagatatcttttcttatctataa 10376773  T
Q  89 tatgtatcatccaacagaaaaaataaatgcttgtttgtggacacacattagactaaaggaattggcatctttgaagtttgaatgataaattctactgtgg 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10376774 tatgtatcatccaacagaaaaaataaatgcttgtttgtggacacacattagactaaaggaattggcatctttgaagtttgaatgataaattctactgtgg 10376873  T
Q  189 accatttcaatatatagtcgattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  10376874 accatttcaatatatagtcgattgtggatcaactagtatttgaaaat 10376920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 10218558 - 10218467
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataaattctactgtggaccatttcaatatatagtcgattgtggatcaactagtatttgaaaat 235  Q
    |||| ||||||||||||||| |||||||||||||||| |  |||||| ||||||||||||||||||| |||||||| |||||||||| |||||    
T  10218558 aaagcaattggcatctttga-gtttgaatgataaatttttttgtggaacatttcaatatatagtcgactgtggatcgactagtattttaaaat 10218467  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 10076496 - 10076431
Alignment:
Q  1 aagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaagtgcatat 66  Q
    ||||||||||||||| ||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  10076496 aagactcgcttgtgaatgaatggataacactaacagcgctgtttttgagtggttggaagtgcatat 10076431  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 9998229 - 9998159
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  9998229 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 9998159  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 10108001 - 10107931
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  10108001 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 10107931  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 10229237 - 10229167
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  10229237 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 10229167  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 177
Target Start/End: Complemental strand, 10108577 - 10108543
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataaa 177  Q
    |||| ||||||||||||||||||||||||||||||    
T  10108577 aaagcaattggcatctttgaagtttgaatgataaa 10108543  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 204
Target Start/End: Complemental strand, 10439285 - 10439255
Alignment:
Q  174 taaattctactgtggaccatttcaatatata 204  Q
    |||||||||||||||||||||||||||||||    
T  10439285 taaattctactgtggaccatttcaatatata 10439255  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 9998811 - 9998778
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataa 176  Q
    |||| |||||||||||||||||||||||||||||    
T  9998811 aaagcaattggcatctttgaagtttgaatgataa 9998778  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 10229816 - 10229783
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataa 176  Q
    |||| |||||||||||||||||||||||||||||    
T  10229816 aaagcaattggcatctttgaagtttgaatgataa 10229783  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 10232833 - 10232792
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc 207  Q
    |||||||||||||| || |||||| |||||||||||||||||    
T  10232833 ttgaatgataaattttattgtggaacatttcaatatatagtc 10232792  T

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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 26798029 - 26797938
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataaattctactgtggaccatttcaatatatagtcgattgtggatcaactagtatttgaaaat 235  Q
    |||| ||||||||||||||| |||||||||||||||| |  |||||| ||||||||||||||||||| |||||||| |||||||||| |||||    
T  26798029 aaagcaattggcatctttga-gtttgaatgataaatttttttgtggaacatttcaatatatagtcgactgtggatcgactagtattttaaaat 26797938  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 26802614 - 26802544
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  26802614 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 26802544  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 26810164 - 26810094
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  26810164 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 26810094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 26825191 - 26825121
Alignment:
Q  166 ttgaatgataaattctactgtggaccatttcaatatatagtc-gattgtggatcaactagtatttgaaaat 235  Q
    |||||||||||||| || |||||| ||||||||||||||||| || |||||||| |||||||||| |||||    
T  26825191 ttgaatgataaattttattgtggaacatttcaatatatagtctgactgtggatcgactagtattttaaaat 26825121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 176
Target Start/End: Complemental strand, 26825770 - 26825737
Alignment:
Q  143 aaaggaattggcatctttgaagtttgaatgataa 176  Q
    |||| |||||||||||||||||||||||||||||    
T  26825770 aaagcaattggcatctttgaagtttgaatgataa 26825737  T

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Target: scaffold0083 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 50577 - 50644
Alignment:
Q  1 aagactcgcttgtgagtgaatggataacattaacagtgctgtttttgaatggttggaagtgcatatag 68  Q
    |||||||| |||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  50577 aagactcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgcatatag 50644  T

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