View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_54 (Length: 244)
Name: NF12820_low_54
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8876972 - 8876742
Alignment:
| Q |
1 |
aatgacatcatagtctaacctggattcaggaattttgagtagctgtagagcatgaaatgcattggcaaaagcagtcnnnnnnn-tctgcaatatatgtat |
99 |
Q |
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| T |
8876972 |
aatgacatcatagtctaacctggattcaggaattttgagtagctgtagagcatgaaatgcattggcaaaagcagtcaaaaaaaatctgcaatatatgtat |
8876873 |
T |
|
| Q |
100 |
aagtattagtcacatacatatatcttttgtagacagcatttggttcctaacatgtcagcaagcacataaactgtgcatatcagcaaactacctctatagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8876872 |
aagtattagtcacatacatatatcttttgtagacagcatttggttcctaacatgtcagcaagcacataaactgtgcatatcagcaaactacctctatagc |
8876773 |
T |
|
| Q |
200 |
atcttgattcacccaaacaaattgtcctatg |
230 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
8876772 |
atcttgattcacccaaacaaattgtcctatg |
8876742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 9393997 - 9394212
Alignment:
| Q |
9 |
catagtctaacctggattcaggaattttgagtagctgtagagcatgaaatgcattggcaaaagcagtcnnnnnnntctgcaatatatgtataagtattag |
108 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
9393997 |
catagtctaacctggattcaggaactttgagtggctgtagtgcatgagatgcattggcaaaagcagt---taaaatctacaatatatgtataagtattag |
9394093 |
T |
|
| Q |
109 |
tcacatacatatatcttttgtagacagcatttggttcctaacatgtcagcaagcacataaactgtgcatatcagcaaactacctctatagca---tcttg |
205 |
Q |
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| T |
9394094 |
tcacatacatatatcttttgtagacagcatttggttcctatcatatcagcaagcacataaattgtgcatatcagcaaactacctctatagcatcttcttg |
9394193 |
T |
|
| Q |
206 |
attcacccaaacaaattgt |
224 |
Q |
| |
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||||||||||||||||||| |
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| T |
9394194 |
attcacccaaacaaattgt |
9394212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 336119 - 336224
Alignment:
| Q |
14 |
tctaacctggattcaggaattttgagtagctgtagagcatgaaatgcattggcaaaagcagtcnnnnnnntctgc--aatatatgtataagtattagtca |
111 |
Q |
| |
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||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
336119 |
tctaacctgaatccaggaactttgagtggctgtagagcatgaaatgcattggcaaaagcagtc---aaaatctgcaaaatatatgtaggagtattagtca |
336215 |
T |
|
| Q |
112 |
catacatat |
120 |
Q |
| |
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||||||||| |
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|
| T |
336216 |
catacatat |
336224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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