View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_56 (Length: 242)
Name: NF12820_low_56
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 24058914 - 24058682
Alignment:
| Q |
1 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
100 |
Q |
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| T |
24058914 |
agtaagaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggaccctttttt |
24058815 |
T |
|
| Q |
101 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
24058814 |
gatatgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgtcttcacatcacggtgaattatgctttgtttagctccagtgt |
24058715 |
T |
|
| Q |
201 |
gaagataaagaagtcctttcgcagcccctatgc |
233 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
24058714 |
gaagataaagaagtcctttcgcagccccgatgc |
24058682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 30730705 - 30730480
Alignment:
| Q |
5 |
agaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgata |
104 |
Q |
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||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
30730705 |
agaaatttagtcctaaaatattctggatcaacttagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgata |
30730606 |
T |
|
| Q |
105 |
tgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaag |
204 |
Q |
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| T |
30730605 |
tgccaaaatcagaaacttttggcacaatctttttgtccaagagaatgtttgttgtcttcacgtcacggtgaattatgctttgtttagctccagtgtgaag |
30730506 |
T |
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| Q |
205 |
ataaagaagtcctttcgcagccccta |
230 |
Q |
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||| | |||||| || |||||||||| |
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| T |
30730505 |
atataaaagtccctttgcagccccta |
30730480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 33872813 - 33872733
Alignment:
| Q |
106 |
gccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttg |
186 |
Q |
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|||||| ||||||||||| | |||| ||| ||||| || ||||||||||| || || ||||| ||||||||||| ||||| |
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| T |
33872813 |
gccaaagtcagcaactttagcaacaaagttatcatctaaaagaatgtttgtcgtctttacatctcggtgaattatactttg |
33872733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 14685198 - 14684987
Alignment:
| Q |
5 |
agaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgata |
104 |
Q |
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|||||| |||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||| |
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| T |
14685198 |
agaaatgtagtcctaaaatattcaggatcaacatagccaaaactaccctttacattcgttgtaacgtgactcttatcaagaattggaccctttttcgata |
14685099 |
T |
|
| Q |
105 |
tgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaag |
204 |
Q |
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|||||||||||||||||||||||||||| ||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14685098 |
tgccaaaatcagcaacttttggcacaagattttcgtccaagagaatgtttgctgtcttcacatcacggtgaattatgctttgtttagctccagtgtgaag |
14684999 |
T |
|
| Q |
205 |
ataaagaagtcc |
216 |
Q |
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||| | |||||| |
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| T |
14684998 |
atataaaagtcc |
14684987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 14671115 - 14671340
Alignment:
| Q |
5 |
agaaatttagtcctaaaatattctggatcaagatagccgaagctaccctttacatgggttgtaacgtggctcttatcaagaagaggacccttttttgata |
104 |
Q |
| |
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||||| ||||||||||||||||| ||||||| |||||| || ||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||| |
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| T |
14671115 |
agaaacttagtcctaaaatattcaggatcaacatagccaaaactaccctttacattagttgtaacgtgactcttatcaagaataggaccctttttcgata |
14671214 |
T |
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| Q |
105 |
tgccaaaatcagcaacttttggcacaaggttttcatccaagagaatgtttgttgttttcacatcacggtgaattatgctttgtttagctccagtgtgaag |
204 |
Q |
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|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| |
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| T |
14671215 |
tgccaaaatcagcaacttttggtacaagattttcgtccaagagaatgtttgttgtctttatgtcacggtgaattatgctttctttagctccagtgtgaag |
14671314 |
T |
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| Q |
205 |
ataaagaagtcctttcgcagccccta |
230 |
Q |
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||| | |||||| || |||||||||| |
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| T |
14671315 |
atataaaagtccctttgcagccccta |
14671340 |
T |
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