View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_58 (Length: 238)
Name: NF12820_low_58
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 221
Target Start/End: Complemental strand, 2598421 - 2598215
Alignment:
| Q |
16 |
ataggcattcccgtagaaagtagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaaggtgtttggattgaagatattc |
115 |
Q |
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| T |
2598421 |
ataggcattgccgtagaaagtagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaagatgtttggattgaagatattt |
2598322 |
T |
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| Q |
116 |
catatttcttgatatatcctttagtacatgacctagcccatttggacctttgatttttctataatatttgttttttattaagaaaaaacacga-gacagt |
214 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |||| |
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| T |
2598321 |
catatttcttgatacatcctttactacatgacctagcccatctggacctttgatttttctataatatttgttttctattaagaaaaaacacgaggccagt |
2598222 |
T |
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| Q |
215 |
agttaat |
221 |
Q |
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||||||| |
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| T |
2598221 |
agttaat |
2598215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 85 - 215
Target Start/End: Complemental strand, 2583046 - 2582915
Alignment:
| Q |
85 |
aatggggaaggtgtttggattgaagatattccatatttcttgatatatcctttagtacatgacctagcccatttggacctttgatttttctataatattt |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2583046 |
aatggggaaggtgtttggattgaagatattccatatttctttatacatcctttggtacatgacctagcccatttggacctttgatttttcgataatattt |
2582947 |
T |
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| Q |
185 |
gttttttattaagaa-aaaacacgagacagta |
215 |
Q |
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||||||||||||||| ||||||| |||||||| |
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| T |
2582946 |
gttttttattaagaaaaaaacacaagacagta |
2582915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 2583836 - 2583772
Alignment:
| Q |
36 |
tagaaacagcaacaaattagcgcattttttaggtaagcatgctattttaaatggggaaggtgttt |
100 |
Q |
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|||||||| |||| ||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
2583836 |
tagaaacaacaaccaattagcccattttttagctaagtatgctattttaaatggggaaggtgttt |
2583772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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