View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_59 (Length: 238)

Name: NF12820_low_59
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_59
NF12820_low_59
[»] chr2 (4 HSPs)
chr2 (18-227)||(450003-450212)
chr2 (24-76)||(28039454-28039506)
chr2 (30-76)||(41880646-41880692)
chr2 (29-77)||(3049894-3049942)
[»] chr4 (7 HSPs)
chr4 (30-76)||(30066910-30066956)
chr4 (26-74)||(51560411-51560459)
chr4 (30-73)||(9720798-9720841)
chr4 (30-76)||(26883875-26883921)
chr4 (30-76)||(39886717-39886763)
chr4 (24-77)||(6466168-6466221)
chr4 (39-76)||(54214895-54214932)
[»] chr7 (8 HSPs)
chr7 (28-76)||(31002944-31002992)
chr7 (30-74)||(32156891-32156935)
chr7 (30-77)||(46945774-46945821)
chr7 (30-76)||(425965-426011)
chr7 (38-76)||(25595986-25596024)
chr7 (24-76)||(6824815-6824866)
chr7 (29-65)||(38600422-38600458)
chr7 (33-73)||(47302822-47302862)
[»] chr3 (4 HSPs)
chr3 (24-76)||(36587872-36587924)
chr3 (24-76)||(37138242-37138294)
chr3 (24-85)||(33674775-33674836)
chr3 (41-73)||(52267342-52267374)
[»] chr8 (8 HSPs)
chr8 (24-74)||(787722-787772)
chr8 (24-76)||(37153012-37153064)
chr8 (30-77)||(8499086-8499133)
chr8 (29-76)||(44426530-44426577)
chr8 (24-74)||(773228-773278)
chr8 (24-77)||(1929947-1929999)
chr8 (36-77)||(31118858-31118899)
chr8 (30-74)||(30665650-30665694)
[»] chr1 (9 HSPs)
chr1 (30-76)||(48064189-48064235)
chr1 (28-76)||(4920892-4920940)
chr1 (24-76)||(34619500-34619552)
chr1 (29-76)||(10280522-10280569)
chr1 (30-76)||(27820484-27820529)
chr1 (26-76)||(36070146-36070196)
chr1 (20-76)||(1005151-1005207)
chr1 (20-76)||(1725229-1725285)
chr1 (24-76)||(33527269-33527321)
[»] chr5 (4 HSPs)
chr5 (23-76)||(32927977-32928030)
chr5 (24-73)||(11054085-11054134)
chr5 (44-76)||(12467070-12467102)
chr5 (32-76)||(40731174-40731218)
[»] chr6 (2 HSPs)
chr6 (30-79)||(33826875-33826924)
chr6 (24-76)||(20368310-20368362)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 450003 - 450212
Alignment:
Q  18 cgtagtttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaacaaagctataacaaatgagatattttgccatacatatgaatca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  450003 cgtagtttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaacaaagctattacgaatgagatattttgccatacatatgaatca 450102  T
Q  118 tgtttgacataatgatacattgaagatgattggaagaattcatttttctttttagaaatgagtcgatgacaaatgttggttgttagtctttattttgtta 217  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  450103 tttttgacataatgacacattgaagatgattggaagaattcatttttctttttagaaatgagtcgatgacaaatgttggttgttagtctttattttgtta 450202  T
Q  218 agtgcagtga 227  Q
    ||||| ||||    
T  450203 agtgcggtga 450212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 28039454 - 28039506
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||| |||| ||||||||||||||| |||||| |||| |||||||||||||||    
T  28039454 ttattcatatgcgcttatgctataaactgcaaattaagttgtttatccaaaca 28039506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 41880646 - 41880692
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||| |||||||||||||||  ||| |||||||||||||||    
T  41880646 ataagcgcttgtgctataagctgcaaagtaagttgtttatccaaaca 41880692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3049942 - 3049894
Alignment:
Q  29 cataagcgcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    |||| |||||| |||||||||||||||  |||||||||||| |||||||    
T  3049942 catacgcgcttctgctataagctgcaaaataaattgtttatgcaaacaa 3049894  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 30066910 - 30066956
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||    
T  30066910 ataagcgcttatgctataagctgcaaattaaattgtttatgcaaaca 30066956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 51560411 - 51560459
Alignment:
Q  26 atacataagcgcttatgctataagctgcaacttaaattgtttatccaaa 74  Q
    |||||||||||||||||| |||||||| || |||| |||||||||||||    
T  51560411 atacataagcgcttatgcaataagctgtaaattaagttgtttatccaaa 51560459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 9720798 - 9720841
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaa 73  Q
    ||||||||||||| |||||||||||| || ||||||||||||||    
T  9720798 ataagcgcttatgatataagctgcaaatttaattgtttatccaa 9720841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 26883921 - 26883875
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||| ||||||| |||| |||||||| ||||||    
T  26883921 ataagcgcttatgctatatgctgcaaattaagttgtttatacaaaca 26883875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 39886717 - 39886763
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  39886717 ataagcgtttatgctataagctgcaaaataatttgtttatccaaaca 39886763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 6466168 - 6466221
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    |||| |||||||||||| ||||||||||||||   || ||||||||||||||||    
T  6466168 ttattcataagcgcttacgctataagctgcaaaagaagttgtttatccaaacaa 6466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 54214932 - 54214895
Alignment:
Q  39 tatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  54214932 tatgctataagctgcaaattaagttgtttatccaaaca 54214895  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 31002944 - 31002992
Alignment:
Q  28 acataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||||||| ||||| |||| |||||||||||||||    
T  31002944 acataagcgcttatgctataagatgcaaattaagttgtttatccaaaca 31002992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 32156935 - 32156891
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaa 74  Q
    ||||||| |||||||||||||||||| |||| |||||||||||||    
T  32156935 ataagcgtttatgctataagctgcaaattaagttgtttatccaaa 32156891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 46945821 - 46945774
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||||    
T  46945821 ataagcgcttaagctataagctgcaaactaagttgtttatccaaacaa 46945774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 425965 - 426011
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||||||||||||||||||||  ||| || ||||||||||||    
T  425965 ataagcgcttatgctataagctgcaaaataagttatttatccaaaca 426011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 25596024 - 25595986
Alignment:
Q  38 ttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  25596024 ttatgctataagctgcaagttaagttgtttatccaaaca 25595986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 6824866 - 6824815
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||| ||| |||||||||||| ||||| ||||| ||||||||||||||    
T  6824866 ttatacata-gcgtttatgctataaggtgcaaattaaactgtttatccaaaca 6824815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 38600422 - 38600458
Alignment:
Q  29 cataagcgcttatgctataagctgcaacttaaattgt 65  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  38600422 cataagcgcttatgctataagctgcaaattaagttgt 38600458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 47302862 - 47302822
Alignment:
Q  33 agcgcttatgctataagctgcaacttaaattgtttatccaa 73  Q
    ||||||||||||| ||||||||| |||| ||||||||||||    
T  47302862 agcgcttatgctacaagctgcaaattaagttgtttatccaa 47302822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 36587924 - 36587872
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||| |||||||||||||||||||||||| || |||||||||||||| |||||    
T  36587924 ttattcataagcgcttatgctataagctgtaaattaaattgtttatcgaaaca 36587872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 37138294 - 37138242
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||| ||||||||||||||| ||| |||| |||||||||||||||    
T  37138294 ttatacataagcacttatgctataagcttcaaattaagttgtttatccaaaca 37138242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 33674775 - 33674836
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaacaaagctataa 85  Q
    ||||| |||||||||||||||||| ||||||| ||||  |||||||| ||| | ||||||||    
T  33674775 ttataaataagcgcttatgctataggctgcaaattaagctgtttatctaaatagagctataa 33674836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 52267374 - 52267342
Alignment:
Q  41 tgctataagctgcaacttaaattgtttatccaa 73  Q
    ||||||||||||||| |||||||||||||||||    
T  52267374 tgctataagctgcaaattaaattgtttatccaa 52267342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 787772 - 787722
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaa 74  Q
    ||||| |||||||| ||||||||||| ||||| ||||||||||||||||||    
T  787772 ttataaataagcgcatatgctataagttgcaaattaaattgtttatccaaa 787722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 37153012 - 37153064
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||| ||||||| ||||| |||| ||||| |||||||||    
T  37153012 ttatacataagcgcttatcctataagttgcaaattaagttgttaatccaaaca 37153064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 8499133 - 8499086
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    |||||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  8499133 ataagcgcttatactataagttgcaaattaagttgtttatccaaacaa 8499086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 44426530 - 44426577
Alignment:
Q  29 cataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||| ||||||||||||||||||| |||| ||||||| |||||||    
T  44426530 cataagcacttatgctataagctgcaaattaagttgtttacccaaaca 44426577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 773278 - 773228
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaa 74  Q
    ||||| |||||||| ||||||||||| || || ||||||||||||||||||    
T  773278 ttataaataagcgcatatgctataagttgaaaattaaattgtttatccaaa 773228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 1929999 - 1929947
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    |||||||||||||||| |||||||||||||||  ||| ||||||||| ||||||    
T  1929999 ttatacataagcgcttgtgctataagctgcaa-gtaagttgtttatcaaaacaa 1929947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 31118858 - 31118899
Alignment:
Q  36 gcttatgctataagctgcaacttaaattgtttatccaaacaa 77  Q
    |||||||||||||||||||  |||| ||||||||||||||||    
T  31118858 gcttatgctataagctgcacattaagttgtttatccaaacaa 31118899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 30665650 - 30665694
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaa 74  Q
    |||||| ||||||||||||| || || ||||||||||||||||||    
T  30665650 ataagcacttatgctataagatggaaattaaattgtttatccaaa 30665694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 48064235 - 48064189
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||||    
T  48064235 ataagggcttatgctataagctgcaaattaagttgtttatccaaaca 48064189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 4920892 - 4920940
Alignment:
Q  28 acataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||| ||||||||||||||||||| ||||  ||||||||||||||    
T  4920892 acataagcacttatgctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 34619500 - 34619552
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||||||  |||||||||||||||||| ||||  ||||||||||||||    
T  34619500 ttatacataagcaattatgctataagctgcaaattaagctgtttatccaaaca 34619552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 10280569 - 10280522
Alignment:
Q  29 cataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||||||||| ||  ||| |||||||||||||||    
T  10280569 cataagcgcttatgctataagctgtaaactaagttgtttatccaaaca 10280522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 27820484 - 27820529
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||||    
T  27820484 ataagcgcttatgctataagctgcaa-ataagttgtttatccaaaca 27820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 36070196 - 36070146
Alignment:
Q  26 atacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||||||||||||||||||| |||   ||||||| ||||||    
T  36070196 atacataagcgcttatgctataagctgcaaattaggctgtttatacaaaca 36070146  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 1005151 - 1005207
Alignment:
Q  20 tagtttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||||||||| | ||||| ||||||||| || |||  |||||||||||||||    
T  1005151 tagtttatacataagtgtttatgatataagctgaaaattatgttgtttatccaaaca 1005207  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 1725229 - 1725285
Alignment:
Q  20 tagtttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||||   |||||||||||||||| ||| |||| |||||||| ||||||    
T  1725229 tagtttatacatacctgcttatgctataagctccaaattaagttgtttatacaaaca 1725285  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 33527269 - 33527321
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||| |||||||||||||||| ||||||||||  |||  ||||||||||||||    
T  33527269 ttattcataagcgcttatgctctaagctgcaaaataagctgtttatccaaaca 33527321  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 32928030 - 32927977
Alignment:
Q  23 tttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    ||||||||| |||||||||| |||||||||||| |||| |||||||| ||||||    
T  32928030 tttatacattagcgcttatgatataagctgcaaattaagttgtttattcaaaca 32927977  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 11054134 - 11054085
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaa 73  Q
    ||||||||||||| ||||||||||||| | || |||| ||||||||||||    
T  11054134 ttatacataagcgtttatgctataagccggaaattaagttgtttatccaa 11054085  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 12467102 - 12467070
Alignment:
Q  44 tataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||| ||||||||||||||||||||    
T  12467102 tataagctgcaaattaaattgtttatccaaaca 12467070  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 40731218 - 40731174
Alignment:
Q  32 aagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||| |||||||||||||||||||  ||| |||||||||||||||    
T  40731218 aagcacttatgctataagctgcaaaataatttgtttatccaaaca 40731174  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 33826875 - 33826924
Alignment:
Q  30 ataagcgcttatgctataagctgcaacttaaattgtttatccaaacaaag 79  Q
    |||||| |||||||| |||| |||||  ||||||||||||||||||||||    
T  33826875 ataagcacttatgctttaagatgcaaaataaattgtttatccaaacaaag 33826924  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 20368310 - 20368362
Alignment:
Q  24 ttatacataagcgcttatgctataagctgcaacttaaattgtttatccaaaca 76  Q
    |||||||||||| |||| | |||||||||| | |||| |||||||||||||||    
T  20368310 ttatacataagcacttagggtataagctgccaattaagttgtttatccaaaca 20368362  T

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