View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_6 (Length: 637)
Name: NF12820_low_6
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 49180708 - 49180320
Alignment:
| Q |
15 |
cacagaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttccaaaaaacac |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
49180708 |
cacaaaggggcatagcaaattgaaattaaattcaagacaacaagagaaacagcacagcgaacgcttacaatccagacaaaagtttctttcagaaaaacac |
49180609 |
T |
|
| Q |
115 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccannnnnnngcaaggattgggcatatcattttatctataataacatgtgaggaaccat |
214 |
Q |
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| T |
49180608 |
agattgatccatgcttgcacaggcgtatctcacaaaactcaccattttttcgcaaggattgggcatatcattttatctgtaataacatgtgaggaaccat |
49180509 |
T |
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| Q |
215 |
gaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180508 |
gaatagtatgcatagtgaacgaaaggaagatcaaacaaaacacagacacagtctcaaacctgacttccagccctgtagcagcaaactcatcttatacgtg |
49180409 |
T |
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| Q |
315 |
gcatatagccatttttgtaagtcactgcattaaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
403 |
Q |
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| T |
49180408 |
gcatatagccatttttgtaagtcactgcattgaacaaagaatttaacaggaatccttccccgcgttcaatagcaactagcagcattttc |
49180320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 398 - 618
Target Start/End: Complemental strand, 49180247 - 49180027
Alignment:
| Q |
398 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctatgcttcatctta |
497 |
Q |
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| T |
49180247 |
attttcccacaaaagttaacaattatgtagttgtcaaccatgcaataggtgaaggacaaatttagtgattttcacctttaatgacctaagcttcatctta |
49180148 |
T |
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| Q |
498 |
ttgaaaaactatatgtgataataatctttctagcaagcataacgagtgagggcagagttgcagaacacatagtacataacaaacgagagtgcaaaattgc |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49180147 |
ttgaaaaactatatgtgataataatctttctagcaagcataacgagtgagggcagagttgcagaacacatagtacataacaaacgagagtgcaaaattgc |
49180048 |
T |
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| Q |
598 |
aacattagaaacaagttaaag |
618 |
Q |
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| T |
49180047 |
aacattagaaacaagttaaag |
49180027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 498 - 557
Target Start/End: Original strand, 49169999 - 49170058
Alignment:
| Q |
498 |
ttgaaaaactatatgtgataataatctttctagcaagcataacgagtgagggcagagttg |
557 |
Q |
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|||||||||||||| ||||||||||||||| | | | ||||| ||||||||||||||||| |
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| T |
49169999 |
ttgaaaaactatatatgataataatctttccacccaacataatgagtgagggcagagttg |
49170058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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