View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_63 (Length: 232)

Name: NF12820_low_63
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_63
NF12820_low_63
[»] chr1 (10 HSPs)
chr1 (16-215)||(51221920-51222119)
chr1 (86-215)||(51382169-51382298)
chr1 (87-193)||(51857801-51857907)
chr1 (86-185)||(51781990-51782089)
chr1 (108-205)||(51828969-51829067)
chr1 (86-193)||(51763681-51763786)
chr1 (138-185)||(25869453-25869500)
chr1 (87-186)||(51831604-51831703)
chr1 (149-185)||(23896904-23896940)
chr1 (145-185)||(45693643-45693683)
[»] chr6 (1 HSPs)
chr6 (131-209)||(4183741-4183819)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 51222119 - 51221920
Alignment:
Q  16 atgaacttgcagctattgacatcactctcttcctcctccgaaactcccaccaattcacttcaccctccttctcttccgttccatctcgttgaagaaatcc 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51222119 atgaacttgcagctattgatatcactctcttcctcctccgaaactcccaccaattcacttcaccctccttctcttccgttccatctcgttgaagaaatcc 51222020  T
Q  116 tgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaagcaact 215  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  51222019 tgtgccggctgcccgtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaact 51221920  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 86 - 215
Target Start/End: Complemental strand, 51382298 - 51382169
Alignment:
Q  86 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    ||||||||||| |||| || | |||||||||||||| ||| ||| ||||||||||| |||||||||| ||| |||||||||||||||||| |||||||||    
T  51382298 ctcttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctc 51382199  T
Q  186 tcttgatttcaattttgccaagaagcaact 215  Q
    || ||||| |||||| ||||||||||||||    
T  51382198 tcatgattccaatttcgccaagaagcaact 51382169  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 51857801 - 51857907
Alignment:
Q  87 tcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctct 186  Q
    |||| ||||| |||||||   |||||| ||||||| ||| ||| ||||| | ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  51857801 tctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaactccgttgcatctgcaagtcatggaattctcttatctct 51857900  T
Q  187 cttgatt 193  Q
    | |||||    
T  51857901 catgatt 51857907  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 51781990 - 51782089
Alignment:
Q  86 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    ||||||||||| |||| |||| |||||||||||| | ||| ||| ||||||| |||||| |||||||| |  |||| |||||||||||||||||||||||    
T  51781990 ctcttccgttcgatctggttgcagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctc 51782089  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 205
Target Start/End: Original strand, 51828969 - 51829067
Alignment:
Q  108 agaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgc-aagtcatggaattctcttatctctcttgatttcaattttgcca 205  Q
    |||||| ||||||| ||| ||| |||||||||||||||||||||| ||  ||||| ||||||||||||||||||||| ||   |||| |||||||||||    
T  51828969 agaaatactgtgcctgctccccgtgaaacacctcattcaactccgttgtgtctgcaaagtcatggaattctcttatccctgaggattccaattttgcca 51829067  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 51763786 - 51763681
Alignment:
Q  86 ctcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    ||||||||||  |||||||   |||||| |||||||||||  || ||||||| ||| |||||||| | ||| |||||||||||||||||||||||||||     
T  51763786 ctcttccgtttgatctcgtgacagaaattctgtgccggct--ccgtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttatctg 51763689  T
Q  186 tcttgatt 193  Q
    || |||||    
T  51763688 tcatgatt 51763681  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 185
Target Start/End: Complemental strand, 25869500 - 25869453
Alignment:
Q  138 cctcattcaactccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    |||||| |||||||||||||| |||||||||||||||||||| |||||    
T  25869500 cctcatgcaactccgctgcatttgcaagtcatggaattctctaatctc 25869453  T

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Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 51831604 - 51831703
Alignment:
Q  87 tcttccgttccatctcgttgaagaaatcctgtgccggctgcccatgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctct 186  Q
    |||||||||  ||||||| | || ||||||||||||||| ||  |||||   ||| |||||||||| ||  |||||||||||||||| ||||||||||||    
T  51831604 tcttccgtttgatctcgtggtagtaatcctgtgccggctcccagtgaaatttctccttcaactccgttgtgtctgcaagtcatggaactctcttatctct 51831703  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 23896940 - 23896904
Alignment:
Q  149 tccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    |||||||| |||||||||||||||||||||| |||||    
T  23896940 tccgctgcgtctgcaagtcatggaattctctaatctc 23896904  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 45693683 - 45693643
Alignment:
Q  145 caactccgctgcatctgcaagtcatggaattctcttatctc 185  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  45693683 caactccgctgcatatgcaagtcgtggaattctctaatctc 45693643  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 4183819 - 4183741
Alignment:
Q  131 tgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcttgatttcaattttgccaagaa 209  Q
    ||||||||||| |||||||||| ||| | |||||||| ||||||||||||||||| | ||||| ||| || ||||||||    
T  4183819 tgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaattcgccaagaa 4183741  T

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