View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_7 (Length: 603)
Name: NF12820_low_7
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 154 - 585
Target Start/End: Complemental strand, 4311132 - 4310701
Alignment:
| Q |
154 |
ttggtacatatattgcatataagttatcagttgtgaatgagtaaagagctggacggacccagttttgcagctagttctagttacactcgtagnnnnnnnn |
253 |
Q |
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| T |
4311132 |
ttggtacatatattgcatataagttatcagttgtgaatgagtaaagagctggacggacccagttttgcagctagttctagttacactcgtagttttcttt |
4311033 |
T |
|
| Q |
254 |
naagggtcttgtgaaaccaatttctgtaattgtctttggattagactacttgaatcaaattttggaaacaaatcataaaactctagagggagttgcattt |
353 |
Q |
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| T |
4311032 |
taagggtcttgtgaaaccaatttctgtaattgtctttggattagactacttgaatcaaattttggagacaaatcataaaactctagagggagttgcattt |
4310933 |
T |
|
| Q |
354 |
agagatgtcgtatcgaaagtgaattttattcacttagtggacaataacggatacatttaatagtataagagttgtgttattaaaaagaaaaggtcttaga |
453 |
Q |
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| T |
4310932 |
agagatgtcgtatcgaaagtgaattttattcacttagtggacgataacgtatacatttaatagtataagagttgcgttattaaaaagaaaaggtcttaga |
4310833 |
T |
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| Q |
454 |
atgcacaacctggaatttaatgaaacaagcatgatgattaaacatattattttccaaatttaagtttaataattgattgttatcatagaaaagcaaatct |
553 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4310832 |
atgcacaccctggaatttaatgaaacaagcatgatgattaaacatattattttccaaatttaagtttaataattgattgttatcatagaaaagcaaatct |
4310733 |
T |
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| Q |
554 |
tgataaaccttaaaacttcaattctttaatgc |
585 |
Q |
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| T |
4310732 |
tgataaaccttaaaacttcaattctttaatgc |
4310701 |
T |
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