View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12820_low_70 (Length: 214)

Name: NF12820_low_70
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12820_low_70
NF12820_low_70
[»] chr7 (18 HSPs)
chr7 (5-198)||(29200882-29201076)
chr7 (7-198)||(16732001-16732193)
chr7 (7-198)||(17710135-17710327)
chr7 (1-196)||(16098552-16098748)
chr7 (34-196)||(22289336-22289499)
chr7 (30-196)||(3601743-3601910)
chr7 (8-198)||(30493537-30493728)
chr7 (65-198)||(9328529-9328662)
chr7 (65-198)||(17877525-17877658)
chr7 (67-197)||(30824422-30824552)
chr7 (80-195)||(47580017-47580132)
chr7 (5-186)||(1581682-1581864)
chr7 (29-196)||(3275124-3275292)
chr7 (118-198)||(24251619-24251699)
chr7 (116-196)||(33224489-33224569)
chr7 (118-198)||(44481267-44481347)
chr7 (148-198)||(24139221-24139271)
chr7 (88-177)||(35013709-35013798)
[»] chr4 (24 HSPs)
chr4 (5-198)||(49951379-49951573)
chr4 (17-196)||(44936011-44936191)
chr4 (5-198)||(29655593-29655787)
chr4 (5-198)||(37245779-37245973)
chr4 (31-196)||(51259458-51259624)
chr4 (5-198)||(2064919-2065113)
chr4 (5-198)||(32576975-32577169)
chr4 (30-196)||(41835240-41835407)
chr4 (5-198)||(26422529-26422723)
chr4 (5-192)||(47226263-47226451)
chr4 (65-196)||(18442076-18442207)
chr4 (5-196)||(28537716-28537908)
chr4 (65-177)||(55735136-55735248)
chr4 (65-198)||(51734899-51735032)
chr4 (66-198)||(28426311-28426443)
chr4 (66-198)||(49119327-49119459)
chr4 (92-196)||(56065787-56065891)
chr4 (81-198)||(24989861-24989977)
chr4 (86-198)||(8754390-8754502)
chr4 (30-198)||(21321618-21321790)
chr4 (5-126)||(43840305-43840427)
chr4 (125-196)||(23095401-23095472)
chr4 (108-198)||(53661187-53661277)
chr4 (108-197)||(7462588-7462677)
[»] chr1 (20 HSPs)
chr1 (16-197)||(5609416-5609598)
chr1 (5-198)||(44527319-44527513)
chr1 (9-198)||(44602822-44603012)
chr1 (65-196)||(48949653-48949784)
chr1 (31-198)||(4395250-4395418)
chr1 (30-196)||(51113406-51113573)
chr1 (5-198)||(25682717-25682911)
chr1 (65-186)||(36733823-36733944)
chr1 (5-198)||(16816724-16816921)
chr1 (65-196)||(21031276-21031407)
chr1 (30-198)||(2885314-2885486)
chr1 (78-198)||(24538627-24538747)
chr1 (52-198)||(52109566-52109713)
chr1 (85-198)||(14485163-14485270)
chr1 (123-198)||(48166412-48166487)
chr1 (108-197)||(38679024-38679113)
chr1 (126-198)||(4898547-4898619)
chr1 (86-198)||(23332577-23332689)
chr1 (144-198)||(23163357-23163411)
chr1 (137-197)||(17371647-17371707)
[»] chr3 (18 HSPs)
chr3 (5-198)||(53497098-53497292)
chr3 (29-196)||(27608832-27609000)
chr3 (66-198)||(2615611-2615743)
chr3 (29-196)||(34497301-34497469)
chr3 (5-194)||(42340208-42340398)
chr3 (5-186)||(11020119-11020301)
chr3 (71-198)||(27747612-27747739)
chr3 (65-196)||(55199638-55199769)
chr3 (80-197)||(31341653-31341770)
chr3 (2-165)||(24176833-24176997)
chr3 (5-198)||(647097-647284)
chr3 (65-196)||(19117649-19117780)
chr3 (82-198)||(2121225-2121341)
chr3 (71-198)||(46007432-46007559)
chr3 (96-198)||(55213483-55213585)
chr3 (114-198)||(26046864-26046948)
chr3 (98-198)||(1702816-1702916)
chr3 (147-194)||(5925700-5925747)
[»] chr8 (15 HSPs)
chr8 (17-198)||(23854010-23854192)
chr8 (17-198)||(40588657-40588839)
chr8 (83-198)||(11870409-11870524)
chr8 (5-198)||(7127289-7127483)
chr8 (31-198)||(33642691-33642859)
chr8 (30-198)||(598164-598333)
chr8 (80-198)||(13415165-13415283)
chr8 (5-197)||(477984-478177)
chr8 (68-198)||(3606666-3606796)
chr8 (8-198)||(8451050-8451241)
chr8 (65-185)||(185532-185651)
chr8 (64-198)||(37712200-37712333)
chr8 (68-198)||(9496908-9497038)
chr8 (120-196)||(36194550-36194626)
chr8 (92-128)||(36194995-36195031)
[»] chr2 (17 HSPs)
chr2 (5-198)||(12130565-12130759)
chr2 (4-177)||(1417929-1418103)
chr2 (5-198)||(34695831-34696025)
chr2 (5-198)||(34718243-34718437)
chr2 (30-198)||(88650-88819)
chr2 (65-198)||(9710082-9710215)
chr2 (31-198)||(13109796-13109964)
chr2 (31-198)||(11291991-11292157)
chr2 (87-198)||(18344221-18344332)
chr2 (9-198)||(14827150-14827339)
chr2 (78-196)||(35158772-35158892)
chr2 (85-198)||(44017245-44017358)
chr2 (98-198)||(26198842-26198942)
chr2 (5-125)||(22845602-22845723)
chr2 (115-198)||(10244497-10244580)
chr2 (105-198)||(25552312-25552405)
chr2 (87-195)||(36445449-36445557)
[»] chr5 (20 HSPs)
chr5 (30-198)||(4268190-4268359)
chr5 (32-198)||(20205048-20205215)
chr5 (5-198)||(25730874-25731068)
chr5 (65-198)||(12660443-12660576)
chr5 (30-196)||(26597386-26597553)
chr5 (30-198)||(41940664-41940833)
chr5 (30-196)||(8388177-8388344)
chr5 (68-198)||(15988676-15988806)
chr5 (71-186)||(27532845-27532960)
chr5 (5-198)||(27292500-27292694)
chr5 (65-196)||(23074959-23075090)
chr5 (5-156)||(34652223-34652375)
chr5 (30-198)||(32632606-32632775)
chr5 (34-198)||(30222767-30222930)
chr5 (129-198)||(22767200-22767269)
chr5 (101-198)||(31908323-31908420)
chr5 (119-198)||(11375449-11375528)
chr5 (104-196)||(30573606-30573698)
chr5 (108-197)||(14823665-14823754)
chr5 (142-196)||(26076484-26076538)
[»] chr6 (12 HSPs)
chr6 (65-198)||(28107266-28107399)
chr6 (65-198)||(14680289-14680422)
chr6 (30-195)||(15605924-15606090)
chr6 (65-198)||(11731596-11731729)
chr6 (65-196)||(34104394-34104525)
chr6 (31-198)||(15053102-15053270)
chr6 (5-195)||(19690809-19691000)
chr6 (82-196)||(27443074-27443191)
chr6 (85-198)||(21944555-21944668)
chr6 (65-185)||(29367996-29368116)
chr6 (108-188)||(3100415-3100496)
chr6 (65-132)||(30801984-30802051)
[»] scaffold0922 (1 HSPs)
scaffold0922 (38-198)||(191-352)
[»] scaffold0446 (1 HSPs)
scaffold0446 (92-196)||(344-448)
[»] scaffold0003 (1 HSPs)
scaffold0003 (82-196)||(44170-44287)
[»] scaffold0198 (1 HSPs)
scaffold0198 (110-198)||(20330-20418)


Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 29201076 - 29200882
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||||||||||||| ||  ||||||||||||| || |||| | |||||||||   |||||||||||| |  |||||||||||||||||||||||    
T  29201076 tttgctgatgtgaacagatggaaacgggttgtcttcgagtctgactcagctactctagtgcaagctctatcgtctctgggccatggtgattcagaattct 29200977  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  29200976 atgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatact 29200882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 16732001 - 16732193
Alignment:
Q  7 tgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctat 105  Q
    |||||||| ||||||||| ||  | ||||||||||| |||||||  ||||||||||   |||||||||| | | |||||||||||||||||||||||| |    
T  16732001 tgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctct 16732100  T
Q  106 gctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  16732101 gctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 16732193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 7 - 198
Target Start/End: Original strand, 17710135 - 17710327
Alignment:
Q  7 tgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctat 105  Q
    |||||||| ||||||||| ||  | ||||||||||| |||||||  ||||||||||   |||||||||| | | |||||||||||||||||||||||| |    
T  17710135 tgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctctatcatctccgggccatggtgattcagaattctct 17710234  T
Q  106 gctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  17710235 gctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 17710327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 16098552 - 16098748
Alignment:
Q  1 tcaatttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctag-ataagctctatcgttttcgggccatggtgattcagaa 99  Q
    ||||||||||||||  |||| |||  |  ||||||||||||| ||||||| ||||||||||| | |||||| ||||| | ||||||||||||||||||||    
T  16098552 tcaatttgctgatgctaacaaatgggaccgggttgtcttcgagtccgactcatctactctagtacaagctccatcgtctccgggccatggtgattcagaa 16098651  T
Q  100 ttctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    ||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| || |||||||| ||| ||||||| |||||||| |||||||||    
T  16098652 ttctatgatattgtttctagtattagttatcagttatctttacattccaacttcaaggtgaagtttgttatgagacaagcgaacatggttgctcata 16098748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 22289336 - 22289499
Alignment:
Q  34 tgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcag 132  Q
    ||||||||| ||||||| | |||||||||   |||| ||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  22289336 tgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcagaattttatgctattgtttctagtattatttttcag 22289435  T
Q  133 ttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||| ||||||||||||||| ||| |||| ||||||||||| |||||||| |||||||||    
T  22289436 ttatctttacattccaacttcgaggtgatgtttgttaggagacaagcgaacatggttgctcata 22289499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 3601743 - 3601910
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||| ||||| ||||||| |||||||||||   ||||| |||||| |  || |||||||||||||||||| ||||||||||||||||||||||||||    
T  3601743 gggttgttttcgagtccgactcatctactctagtgcaagctttatcgtctctggaccatggtgattcagaattttatgctattgtttctagtattattta 3601842  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||| ||||| || |||||| |||||||| ||||||||||| |||||||| |||||||||    
T  3601843 tcagttatctttacattctaaattcgaggtgaagtttgttaggagacaatcgaacatggttgctcata 3601910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 30493728 - 30493537
Alignment:
Q  8 gctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatg 106  Q
    |||||| ||||||||||| |   |||||||||||| ||||||| |  ||||||||   |||||||||||| |||||||||||||||||||||||| ||||    
T  30493728 gctgatatgaacagatgagaccaggttgtcttcgagtccgactcaattactctagtgcaagctctatcgtcttcgggccatggtgattcagaattttatg 30493629  T
Q  107 ctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||||    |||||||| ||||||||||| | |||||| ||| |||||||    
T  30493628 ctattgtttatagtattatttatcagttatctttacatttcaacttcatagtgaagtttgttaggagacaaccaaacatggttgttcatact 30493537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 9328662 - 9328529
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||||||||||   |||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  9328662 aagctctatcgtcagcgggacatggtaattcagaattctatgcgtttgtttctagtattatttatcagttatctttacattccaacttcgatgtgaagtt 9328563  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||||||| |||||||| |||||||||||    
T  9328562 tgttaggagacaagcgaacatggttgctcatact 9328529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 17877525 - 17877658
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||||||||||||  ||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||||    
T  17877525 aagctctatcgtttatgggtcatggtgattcgtaattctatgctattgtttctagtattatttatcagttatctttacatttcaatttcgaggtgaagtt 17877624  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||| ||||||| ||| |||| |||||||||||    
T  17877625 tgttatgagacaagcgaccatggttgctcatact 17877658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 197
Target Start/End: Complemental strand, 30824552 - 30824422
Alignment:
Q  67 gctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagttta 166  Q
    |||||||||| |  ||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||  ||||||||     
T  30824552 gctctatcgtctctgggtcatggtgattcagaattctatgttattgtttctagtcttatttatcagttatctttacattccaactttgaagtgaagtttg 30824453  T
Q  167 ttaggagacaaacgaacatgattgctcatac 197  Q
    |||||||| || |||||||| ||||||||||    
T  30824452 ttaggagataagcgaacatggttgctcatac 30824422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 47580017 - 47580132
Alignment:
Q  80 cgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaac 179  Q
    ||||||||||||||||||| | |||||||||||  ||||||||||||||||||||||||||  |||||||||||||| ||||||||  |||||||||| |    
T  47580017 cgggccatggtgattcagagtcctatgctattggatctagtattatttatcagttatctttatattccaacttcgaggtgaagtttggtaggagacaagc 47580116  T
Q  180 gaacatgattgctcat 195  Q
    ||||||| ||||||||    
T  47580117 gaacatggttgctcat 47580132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 186
Target Start/End: Original strand, 1581682 - 1581864
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat--aagctctatcgttttcgggccatggtgattcagaattc 102  Q
    |||||||||| |||||||||| || ||||| | || || ||| ||| |||||| ||| ||  || ||||||||| | ||| ||||||||||||  |||||    
T  1581682 tttgctgatgcgaacagatgagatcgggttctattggagtccaactcatctacacta-atgcaaactctatcgtctccggaccatggtgattcgaaattc 1581780  T
Q  103 tatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatg 186  Q
    ||||| ||||||| || ||||||||||||||||||||| |||| |||||||||  |||||||| ||||||||||| ||||||||    
T  1581781 tatgccattgtttataatattatttatcagttatctttacatttcaacttcgatgtgaagtttgttaggagacaagcgaacatg 1581864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 29 - 196
Target Start/End: Original strand, 3275124 - 3275292
Alignment:
Q  29 tgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattt 127  Q
    |||||||||||||| ||||||| | |||||||||   |||| ||||| | |   ||||| | ||||||| |||| ||||||||||||| |||||||||||    
T  3275124 tgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcatctctaggccacgatgattcataattttatgctattgtttttagtattattt 3275223  T
Q  128 atcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
     |||||||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||| ||| |||||    
T  3275224 ttcagttatctttacattccaacttcgaggtgaagtttgttaagagacaagcgaacatggttgatcata 3275292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 24251619 - 24251699
Alignment:
Q  118 agtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  24251619 agtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 24251699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 33224569 - 33224489
Alignment:
Q  116 ctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||| ||||||||||| ||||||||||||||||||    
T  33224569 ctagtattatttttcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatgattgctcata 33224489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 44481267 - 44481347
Alignment:
Q  118 agtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||| ||||||||||| |||| |||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  44481267 agtattatttaccagttatctttacatttcaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 44481347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 24139221 - 24139271
Alignment:
Q  148 aacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||| || |||||||| ||||||||||| |||||||| |||||||||||    
T  24139221 aacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatact 24139271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 35013709 - 35013798
Alignment:
Q  88 ggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaa 177  Q
    ||||||||  |||| || |||||| ||||| ||||||||  | |||||  ||| |||||||| ||| || ||||||||||||||||||||    
T  35013709 ggtgattctaaattttaggctattatttcttgtattattgctaagttagttttacattccaatttcaagttgaagtttattaggagacaa 35013798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 8e-54; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 49951379 - 49951573
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| ||||||||| ||  | ||||||||||| |||||||  ||||||||||   ||||| |||| | |||||||| |||||||||||||||||    
T  49951379 tttgctgatgcgaacagatggaaccgagttgtcttcgagtccgactcgtctactctagtgcaagctttatcatcttcgggccgtggtgattcagaattct 49951478  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
     |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  49951479 ctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 49951573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 44936191 - 44936011
Alignment:
Q  17 aacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgttt 115  Q
    |||||||||||||||||||| ||||| ||||||| || ||||||||   || ||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  44936191 aacagatgaaattgggttgtgttcgagtccgactcatttactctagtgcaaactctatcgttttcgggccacggtgatttagaattctatgttattgttt 44936092  T
Q  116 ctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    ||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||| |||||||| |||||||||    
T  44936091 ctattattatttatcagttatctttacattccaacttcgaggtgaagtttgttagcagacaagcgaacatggttgctcata 44936011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 29655787 - 29655593
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||||||||||||| ||  | ||||||||||| || ||||   |||||||||   |||||||||| | ||||||||||||||||||||||||||    
T  29655787 tttgctgatgtgaacagatggaaccgtgttgtcttcgagtctgactacgctactctagtgcaagctctatcatcttcgggccatggtgattcagaattct 29655688  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||| ||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||| ||||||||||| |||||||| |||||||||||    
T  29655687 atgttattgtttctagtattatttatcagctatctttacatttccacttcgagatgaagtttgttaggagacaagcgaacatggttgctcatact 29655593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 37245973 - 37245779
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||| |||||||||||||  |  ||||||||||||| || ||||   ||||| |||   ||||||| |||| |  |||||||||||||||||||||||    
T  37245973 tttgcttatgtgaacagatgggaccgggttgtcttcgagtctgactctgctactttagtgcaagctctttcgtctctgggccatggtgattcagaattct 37245874  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  37245873 atgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaatcgaacatggttgctcatact 37245779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 51259624 - 51259458
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttat 129  Q
    |||||||||||| ||||||| | |||||||||   |||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||| |    
T  51259624 ggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtcttcgggccatggtgattcagaattttatgttattgtttctagtattattttt 51259525  T
Q  130 cagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||    
T  51259524 cagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 51259458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 2064919 - 2065113
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| ||||||||| | | |||||||||| || || |||| |||||||||||   |||||||||||| | | || |||||||||||  |||| |    
T  2064919 tttgctgatgagaacagatggagtcgggttgtctttgagtcggactcatctactctagcccaagctctatcgtctccaggtcatggtgattcgaaattat 2065018  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||| |||||||||||||||||||| |||||||||||    
T  2065019 atgctattgtttctagtattatttatcagttatctttacatttcaacttcaaggtgaagtttgttaggagacaaacgaacatggttgctcatact 2065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 32577169 - 32576975
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||| |||| |||  | |||||||||||||| || ||||   |||||||||   |||||| |||||   |||| |||||||||||||||||||    
T  32577169 tttgctgatgtaaacatatgggactgggttgtcttcgagtctgactctgctactctagtgcaagctcaatcgtcagcgggacatggtgattcagaattct 32577070  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  32577069 atgcgattgtttatagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 32576975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 41835407 - 41835240
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| | ||| | |||||||||||   || | ||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  41835407 gggttgtcttcgagttcgattcatctactctagtgcaaacgctatcgtctccgggccatggtgattcggaatcctatgctattgtttctagtattattta 41835308  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||||| || ||||||    
T  41835307 tcagttatctttacattccaatttcgagatgaagtttgttaggagacaagcgaacatggttcctcata 41835240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 26422723 - 26422529
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||| ||||||||  || ||||||||||||| || ||||    ||||||||   ||||||||||||   |||| ||| |||||||||||||||    
T  26422723 tttgctgatgtaaacagatgggatcgggttgtcttcgagtctgactctgatactctagtgcaagctctatcgtcagcgggacatagtgattcagaattct 26422624  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||| || |||||| |||||||||||    
T  26422623 atgcgattgtttttagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacagacaaacatggttgctcatact 26422529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 192
Target Start/End: Complemental strand, 47226451 - 47226263
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| |||||||||| || | ||||| ||||| ||||||| ||||||| ||||  |||||||||||| ||| ||||||||||||||||| || |    
T  47226451 tttgctgatgcgaacagatgagatcgagttgtgttcgagtccgactcatctactttagagcaagctctatcgtcttcaggccatggtgattcagatttat 47226352  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgct 192  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| |  |||||  | ||||| ||||| | ||||||||||||    
T  47226351 atgctattgtttctagtattatttatcaattatctttacattccaacttcaaagtgaagaatgttaggcgacaagcaaacatgattgct 47226263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 18442207 - 18442076
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||| |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| || |||||||    
T  18442207 aagctatatcgtctttggcccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttatattccaacttcaaggtgaagtt 18442108  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||| |||||||||||| ||| |||||||||    
T  18442107 tgttatgagacaaacgaaaatggttgctcata 18442076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 196
Target Start/End: Complemental strand, 28537908 - 28537716
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||| ||||| |||||||||  |  ||||||| ||| | ||||||| ||||||| |||   |||||||||||| |  |||||||||||||||| ||||||    
T  28537908 tttgttgatgcgaacagatgggaccgggttgtgttcaagtccgactcatctactttagtgcaagctctatcgtctctgggccatggtgattcaaaattct 28537809  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    ||||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||  ||| |||||| |||||||| |||||||||    
T  28537808 atgctattgtttctagtattattaatcagttatcattacattccaacttcgaggtgaagtttggtagaagacaagcgaacatggttgctcata 28537716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 65 - 177
Target Start/End: Original strand, 55735136 - 55735248
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||| |||||||||| |||||||    
T  55735136 aagctctatcgtcttcggaccatggtgattcagaattctatgctattgtttctagtattattgatcagttatcttaacatttcaacttcgaggtgaagtt 55735235  T
Q  165 tattaggagacaa 177  Q
    | |||||||||||    
T  55735236 tgttaggagacaa 55735248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 51735032 - 51734899
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| |  || ||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  51735032 aagctctatcgtctctggaccatggtgattcataattctatgatattgtttctagtattatttatctgttatctttacattccaacttcgaggtgaagtt 51734933  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||| |||||  ||||||| |||||||||||    
T  51734932 tgttaggtgacaagtgaacatggttgctcatact 51734899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 28426311 - 28426443
Alignment:
Q  66 agctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagttt 165  Q
    |||||||||||   |||| |||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  28426311 agctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattatttatcagttatctttacattccaacttcgaggagaagttt 28426410  T
Q  166 attaggagacaaacgaacatgattgctcatact 198  Q
     ||||||||||| |||||||| |||||||||||    
T  28426411 gttaggagacaagcgaacatggttgctcatact 28426443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 66 - 198
Target Start/End: Complemental strand, 49119459 - 49119327
Alignment:
Q  66 agctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagttt 165  Q
    |||||||||||   |||| |||||| ||| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  49119459 agctctatcgtcagcgggacatggtaatttagaattatatgcgattgtttctagtattatttatcagttatctttacattccaacttcgaggagaagttt 49119360  T
Q  166 attaggagacaaacgaacatgattgctcatact 198  Q
     ||||||||||| |||||||| |||||||||||    
T  49119359 gttaggagacaagcgaacatggttgctcatact 49119327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 56065787 - 56065891
Alignment:
Q  92 attcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgc 191  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  56065787 attcggaattttatgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgc 56065886  T
Q  192 tcata 196  Q
    |||||    
T  56065887 tcata 56065891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 198
Target Start/End: Complemental strand, 24989977 - 24989861
Alignment:
Q  81 gggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacg 180  Q
    |||||| ||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||||    
T  24989977 gggccacggtgattcaaaattctatgttat-gtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaagagacaaacg 24989879  T
Q  181 aacatgattgctcatact 198  Q
    |||| | ||||| |||||    
T  24989878 aacacggttgcttatact 24989861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 8754502 - 8754390
Alignment:
Q  86 atggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacat 185  Q
    |||||||||  ||||||||| ||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||||| |||||||    
T  8754502 atggtgatttggaattctatactattgtttttagtattatttatcaattatctttacattccaacttcgagatgaagtttgttatgagacaagcgaacat 8754403  T
Q  186 gattgctcatact 198  Q
    | |||||| ||||    
T  8754402 ggttgctcgtact 8754390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 21321618 - 21321790
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagataa---gctctatcgttttcgggccatggtgattcagaattctatgctattgt-ttctagtattat 125  Q
    ||||||||||||| ||||||| |||||||||||   |   ||||||| || |  ||| |||||||||||||||||||||| |||||| ||| | ||||||    
T  21321618 gggttgtcttcgagtccgactcatctactctagtgcaattgctctattgtctcagggtcatggtgattcagaattctatgttattgtgttccaatattat 21321717  T
Q  126 ttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||||| |||| |||||||||||| || |||||||||||| ||||||| ||| |||| |||||||||||    
T  21321718 ttatcagttagctttacattccaacttcaaggtgaagtttattaagagacaagcgatcatggttgctcatact 21321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 5 - 126
Target Start/End: Complemental strand, 43840427 - 43840305
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat--aagctctatcgttttcgggccatggtgattcagaattc 102  Q
    |||||||||||||||| |||| |  || |||||||||| | ||||| | |||||||| ||  |||||||||||| ||||| |||||||||||| ||||||    
T  43840427 tttgctgatgtgaacaaatgagaccggtttgtcttcgagttcgactcagctactcta-atgcaagctctatcgtcttcggaccatggtgattcggaattc 43840329  T
Q  103 tatgctattgtttctagtattatt 126  Q
    ||||||||||||||||||||||||    
T  43840328 tatgctattgtttctagtattatt 43840305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 23095401 - 23095472
Alignment:
Q  125 tttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||    
T  23095401 tttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattactcata 23095472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 198
Target Start/End: Original strand, 53661187 - 53661277
Alignment:
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||  |||||||||| ||||| |||| |||| |||||||||| | ||  |||||||  || |||||||||||| | ||||||||    
T  53661187 tattgtttcttatattatttatgagttagctttacatttcaacttcgaggtaaaaattattagacgataaacgaacatgactactcatact 53661277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 7462677 - 7462588
Alignment:
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||||| |||| ||||||||  | |||||||||| |||| ||| || ||  |||||||||||| ||| |||| ||||||||||| ||||||    
T  7462677 tattgattcttgtattattgtttagttatctttacatttcaattttgaagtgaagtttattaagagtcaaatgaacatgattgttcatac 7462588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 5609416 - 5609598
Alignment:
Q  16 gaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtt 114  Q
    |||||||||| || ||||||||||||| | ||||| |||||||||||   || ||||||||| |  ||| ||||||||||||||||||||||||||||||    
T  5609416 gaacagatgagatcgggttgtcttcgagttcgactcatctactctagtgcaaactctatcgtctcagggtcatggtgattcagaattctatgctattgtt 5609515  T
Q  115 tctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  5609516 tctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatac 5609598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 44527319 - 44527513
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||  ||||||||  |  ||||||||||||| ||||||| ||||||||| |   |||||||||| | | |||||||||||||||| |||||||    
T  44527319 tttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatctactcttgtgcaagctctatcatctccgggccatggtgattcggaattct 44527418  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||| |||| |||||||||| |||||||||||| || |||||||||||||||||||| ||||||||  ||||||||||    
T  44527419 atgctattgtttctagtattaattattagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatact 44527513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 44602822 - 44603012
Alignment:
Q  9 ctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgc 107  Q
    ||||||||||||||||| |  |||||| |||||| ||  |||   |||||||||   |||||||||| | | ||||||||||||||||| ||||||||||    
T  44602822 ctgatgtgaacagatgagaccgggttgccttcgagtctaactccgctactctagtgcaagctctatcatctccgggccatggtgattcaaaattctatgc 44602921  T
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||||| |||||||| | |||||||||    
T  44602922 tattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggggacaagcgaacatggtggctcatact 44603012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 48949784 - 48949653
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||| ||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  48949784 aagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattatttttcagttatctttacattccaacttcgaggtgaagtt 48949685  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||| |||||||| || ||||||    
T  48949684 tgttaggagacaagcgaacatggttactcata 48949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 4395250 - 4395418
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttat 129  Q
    |||| ||||||| ||| ||| |||||||||||   |||||||||||| |   || ||||||||||||||||||||| ||||||||| |||||||||||||    
T  4395250 ggttatcttcgagtccaactcatctactctagtgcaagctctatcgtctcaaggtcatggtgattcagaattctatcctattgtttatagtattatttat 4395349  T
Q  130 cagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||| |||| |||||| ||| |||||||| ||||||||||| |||||||| |||||||||||    
T  4395350 cagttatctttacatttcaactttgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 4395418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 51113406 - 51113573
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| ||||||| | |||||||||   |||| ||||||| |  ||||||||||||||| || || |||||||||||||||||||||||||     
T  51113406 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctctgggccatggtgattcggagttttatgctattgtttctagtattatttt 51113505  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||  ||||||||||||||| |||||||| |||||||| || |||||||| |||||||||    
T  51113506 tcagttatcttaacattccaacttcgaggtgaagtttgttaggagagaagcgaacatggttgctcata 51113573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 25682717 - 25682911
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctag-ataagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||| |||||||||||||  |  ||| ||||||||| |  |||| | ||||||||| | |||||||||||| | |||||||  |||||| ||||||||    
T  25682717 tttgctaatgtgaacagatgggaccgggctgtcttcgagtttgactcagctactctagtacaagctctatcgtctccgggccacagtgatttagaattct 25682816  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    || ||||||||||||||||||||| |||||||||||| ||||| |||||| || |||||||| ||||||||||| ||| |||| |||||||||||    
T  25682817 atactattgtttctagtattatttttcagttatctttacattctaacttcaaggtgaagtttgttaggagacaagcgagcatggttgctcatact 25682911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 186
Target Start/End: Original strand, 36733823 - 36733944
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||| |||||| | ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36733823 aagctatatcgtctccgggccatgatgattcataattctatgttattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtt 36733922  T
Q  165 tattaggagacaaacgaacatg 186  Q
    | ||| ||||||| ||||||||    
T  36733923 tgttacgagacaagcgaacatg 36733944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 16816921 - 16816724
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatg---gtgattcagaat 100  Q
    ||||||||||  ||||||||  |  ||||||||||||| |||||||  |||||||||| | ||| |||| ||| | || ||||||   ||||||| ||||    
T  16816921 tttgctgatgcaaacagatgggaccgggttgtcttcgagtccgactcgtctactctagttcaagttctaccgtctccgagccatggacgtgattcggaat 16816822  T
Q  101 tctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||  || |||||||| |||||||| ||  ||||||| |||||||||||    
T  16816821 tctacgctattgtttctagtattatttatcagttatctttacattccaactttaaggtgaagtttgttaggagagaagagaacatggttgctcatact 16816724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 21031276 - 21031407
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| | ||| | |||||||||| ||||| |||| ||| |||||||||||||||||||| |||||||| ||| | ||||||||| |||||||    
T  21031276 aagctctatcgtctccggactatggtgattcggaattttatgttatagtttctagtattatttatcaattatctttacatcctaacttcgaggtgaagtt 21031375  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||| ||||||||||||||||||    
T  21031376 ttttaggagacaagcgaacatgattgctcata 21031407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 2885314 - 2885486
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| || |||| | |||||||||   |||||||||||| ||||||| |||||||||| || || ||||||||||||||||||||||||||    
T  2885314 gggttgtcttcgagtcagactcagctactctagtgcaagctctatcgtcttcgggctatggtgattcggagttatatgctattgtttctagtattattta 2885413  T
Q  129 tcag----ttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||    |||||||| |||| |||||||| | |||||||| |||||| |||| |||||||| |||||||||||    
T  2885414 tcagttaattatctttacatttcaacttcgtggtgaagtttgttaggatacaagcgaacatg-ttgctcatact 2885486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 24538627 - 24538747
Alignment:
Q  78 ttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaa 177  Q
    |||||| ||| |||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||| ||||| ||| |||||||  |||||| ||||    
T  24538627 ttcgggtcatagtgattcagaattctacgctattatttctagtattatttatctgttatctttacattctaactttgaggtgaagttcgttaggaaacaa 24538726  T
Q  178 acgaacatgattgctcatact 198  Q
     ||||||||||||||||||||    
T  24538727 gcgaacatgattgctcatact 24538747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 52109566 - 52109713
Alignment:
Q  52 atctactctag-ataagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaac 150  Q
    ||||||||||| | ||||||||| || | ||| |||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||| ||||| |||    
T  52109566 atctactctagtacaagctctattgtctccggaccatggtgattcggaattctatgttattgtttctagtattagttatcagttatctttacattctaac 52109665  T
Q  151 ttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||| || | |||||| ||| ||||||||| |||||  ||| |||||||    
T  52109666 ttcaaggtaaagtttgttatgagacaaacaaacatagttgttcatact 52109713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 14485163 - 14485270
Alignment:
Q  85 catggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaaca 184  Q
    ||||||||||||||||||||||      ||| ||||||| |||||||||||| ||| |||||||||||  || ||||||| |||||||||||||||||||    
T  14485163 catggtgattcagaattctatg------tttttagtattgtttatcagttatttttacattccaactttaaggtgaagttcattaggagacaaacgaaca 14485256  T
Q  185 tgattgctcatact 198  Q
    |  |||||||||||    
T  14485257 tagttgctcatact 14485270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 48166412 - 48166487
Alignment:
Q  123 tatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||| ||||||||| |||| ||||||| ||||||||||| |||||| |||||||||||||||||||| ||||    
T  48166412 tatttatctgttatctttacatttcaacttcaagatgaagtttgttaggaaacaaacgaacatgattgctcgtact 48166487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 38679113 - 38679024
Alignment:
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||||||||||| |||||||||| || || |||| |||||||||||| || |||||||||||||| || ||| ||| |||||| |||||||    
T  38679113 tattgtttctaatattatttataaggtagctttacattccaacttcaaggtgaagtttattaggcgaaaaatgaatatgattactcatac 38679024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 4898619 - 4898547
Alignment:
Q  126 ttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||| ||||| |||| |||||||||  | |||||| |||||||||||||||| |||||||||||||||    
T  4898619 ttatcagttgtctttacatttcaacttcgatgtaaagtttgttaggagacaaacgaatatgattgctcatact 4898547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 23332577 - 23332689
Alignment:
Q  86 atggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacat 185  Q
    ||||||||||| |||| |||| |||||||| || |||||||| | |||||||||||  || | ||||  ||||||| ||| |||| |||||| ||| |||    
T  23332577 atggtgattcaaaattgtatgttattgtttttattattatttgtgagttatctttgtttttctactttaagatgaaatttgttagaagacaagcgagcat 23332676  T
Q  186 gattgctcatact 198  Q
    | |||||||||||    
T  23332677 ggttgctcatact 23332689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 23163357 - 23163411
Alignment:
Q  144 ttccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||| |||||| |||| |||||| |||||||| |||||||||||    
T  23163357 ttccaacttcgagataaagtttgttagaagacaagcgaacatggttgctcatact 23163411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 17371647 - 17371707
Alignment:
Q  137 ctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    |||| |||||||||||| || |||||||||||||||||||| |||| ||| | ||||||||    
T  17371647 ctttacattccaacttcaaggtgaagtttattaggagacaagcgaatatggtcgctcatac 17371707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 53497098 - 53497292
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||  ||||||||  |  ||||||||||||| ||||||| ||||||||| |   |||||||||||| | |||||||||||||||| |||||||    
T  53497098 tttgctgatgctaacagatgggaccgggttgtcttcgagtccgactcatctactcttgtgcaagctctatcgtctccgggccatggtgattcggaattct 53497197  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||||  ||||||||||    
T  53497198 atgctattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggctgctcatact 53497292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 27609000 - 27608832
Alignment:
Q  29 tgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattt 127  Q
    |||||||||||||| ||||||| | |||||||||   |||| ||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  27609000 tgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttctagtattattt 27608901  T
Q  128 atcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
     |||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||    
T  27608900 ttcagttatctttacattccaacttcgagctgaagtttgttaggagacaagcgaacatggttgctcata 27608832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 198
Target Start/End: Original strand, 2615611 - 2615743
Alignment:
Q  66 agctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagttt 165  Q
    ||||||||||| || | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  2615611 agctctatcgtctttgtgccatggtgattcagaattctatgatattgtttttagtattatttatcagttatttttacattccaacctcgagatgaagttt 2615710  T
Q  166 attaggagacaaacgaacatgattgctcatact 198  Q
     |||||||||||||||||||| |||||||||||    
T  2615711 gttaggagacaaacgaacatggttgctcatact 2615743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 34497469 - 34497301
Alignment:
Q  29 tgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattt 127  Q
    |||||||||||||| ||||||| | |||||||||   |||| ||||||| | |||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  34497469 tgggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgctattgttcctagtattattt 34497370  T
Q  128 atcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
     |||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||    
T  34497369 ttcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 34497301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 42340398 - 42340208
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||| ||||||||||||||  |  | ||||||||||| || |||| | ||||| |||   ||||||| |||| | ||||||||||||||||||||||||    
T  42340398 tttgcagatgtgaacagatgggaccgagttgtcttcgagtcagactcagctactttagtgcaagctctgtcgtctccgggccatggtgattcagaattct 42340299  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctca 194  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||    
T  42340298 atgctattgtttctaatattatttatcagctatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctca 42340208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 11020301 - 11020119
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctaga-taagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| ||||| ||| || |||||||||||||| || |||||| |||||| ||  |||| |||||||| | ||||||||||||||||||||||||    
T  11020301 tttgctgatgggaacaaatggaactgggttgtcttcgagtctgacttaactactccagtgtaaggtctatcgtctccgggccatggtgattcagaattct 11020202  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatg 186  Q
     ||||||||||||||||||||||||||| |||||||| |||| |||| ||||  |||||||| || |||||||| ||||||||    
T  11020201 gtgctattgtttctagtattatttatcaattatctttacatttcaacctcgatgtgaagtttgtttggagacaagcgaacatg 11020119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 27747739 - 27747612
Alignment:
Q  71 tatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattag 170  Q
    |||||| | ||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||| |||||||| |||     
T  27747739 tatcgtctccgggccatggtgattcaaaattctatgctattgtttttagtattatttttcagttatctttacattccaacttcgaggtgaagtttgttaa 27747640  T
Q  171 gagacaaacgaacatgattgctcatact 198  Q
    ||||||| |||||||  |||||||||||    
T  27747639 gagacaagcgaacatagttgctcatact 27747612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 55199638 - 55199769
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||| ||||||| | |||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||||||    
T  55199638 aagcgctatcgtctacgggtcatggtgattcggaattttatgctattgtttctagtattatttttcagtcatctttacattccaacttcgaggtgaagtt 55199737  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||| |||||||| |||||||||    
T  55199738 tgttaggagacaagcgaacatggttgctcata 55199769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 31341770 - 31341653
Alignment:
Q  80 cgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaac 179  Q
    |||| ||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||    
T  31341770 cgggtcatggtgattcagaattttatactattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttattaggagacaaac 31341671  T
Q  180 gaacatgattgctcatac 197  Q
      ||||| ||||||||||    
T  31341670 tgacatggttgctcatac 31341653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 24176833 - 24176997
Alignment:
Q  2 caatttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaat 100  Q
    ||||||| |||| ||||||||||| |||||||||||||||| || |||  | |||||||||   |||||||||||| |  ||| ||||||||||| ||||    
T  24176833 caatttgttgatttgaacagatgagattgggttgtcttcgagtctgacacaactactctagtgcaagctctatcgtctctgggtcatggtgattcggaat 24176932  T
Q  101 tctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagttt 165  Q
    |||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  24176933 tctaagctattgtatctagtattatttataagttatctttacattccaacttcgaggtgaagttt 24176997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 647284 - 647097
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||||||||||||  |  | ||| ||||||| || |||| |||||||||||   |||||||||||| | |||||||||||||||| |||||||    
T  647284 tttgctgatgtgaacagatgtgaccgagttatcttcgagtctgactcatctactctagtgcaagctctatcgtctccgggccatggtgattcggaattct 647185  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||| | |||||| ||||||       ||||||||||| ||||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||    
T  647184 atgttgttgtttatagtat-------cagttatctttacattccaacttcgaggtgaaatttgttaggagacaaacgaacatggttgctcatact 647097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 19117780 - 19117649
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||| ||||||| | |||||||||||||||| ||||| ||||||||||||| ||||||||||| |||||||| |||||||||||| || ||| |||||||    
T  19117780 aagcgctatcgtctccgggccatggtgattcggaattttatgctattgtttttagtattatttttcagttatttttgcattccaaatttgaggtgaagtt 19117681  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||  |||||||  |||||||||    
T  19117680 tgttaggagacagtcgaacatagttgctcata 19117649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 2121225 - 2121341
Alignment:
Q  82 ggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacga 181  Q
    ||||||| | ||||| |||| | |||||||||||||||||||||||||||||||||||| |||  |||||||||| | |||||| ||||||||||| |||    
T  2121225 ggccatgattattcataattttgtgctattgtttctagtattatttatcagttatctttacatctcaacttcgaggtaaagtttgttaggagacaagcga 2121324  T
Q  182 acatgattgctcatact 198  Q
    ||||| |||||||||||    
T  2121325 acatggttgctcatact 2121341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 46007432 - 46007559
Alignment:
Q  71 tatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattag 170  Q
    |||||| | |||||||||| ||||| ||||| ||||||||||||||||| |||||||||||||||| ||| ||||| || ||   | | |||||| ||||    
T  46007432 tatcgtctccgggccatggcgattcggaattttatgctattgtttctagcattatttatcagttatttttacattctaattttagggtaaagtttgttag 46007531  T
Q  171 gagacaaacgaacatgattgctcatact 198  Q
     ||||||| |||||||||||||||||||    
T  46007532 aagacaaatgaacatgattgctcatact 46007559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 55213483 - 55213585
Alignment:
Q  96 agaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcat 195  Q
    |||||||||||||||||||| | ||||||| |||||||||||||| | ||||||||||||| |||| ||| |||||||| || |||||||| ||||| ||    
T  55213483 agaattctatgctattgtttttggtattatatatcagttatctttacgttccaacttcgaggtgaaatttgttaggagaaaagcgaacatggttgcttat 55213582  T
Q  196 act 198  Q
    |||    
T  55213583 act 55213585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 26046864 - 26046948
Alignment:
Q  114 ttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||| ||| |||| ||||||||||| |||||||| |||||||||||    
T  26046864 ttctagtattatttatcagttatctttacattctaactttgaggtgacgtttgttaggagacaagcgaacatggttgctcatact 26046948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 1702916 - 1702816
Alignment:
Q  98 aattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||||||||  |||| ||| ||||||||||||  |||||||||| ||||| |||||| || |||||||| |||| |||||| |||| |||||| |||||||    
T  1702916 aattctattttattatttttagtattatttactagttatctttacattcgaacttcaaggtgaagtttgttagaagacaagcgaatatgattactcatac 1702817  T
Q  198 t 198  Q
    |    
T  1702816 t 1702816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 5925747 - 5925700
Alignment:
Q  147 caacttcgagatgaagtttattaggagacaaacgaacatgattgctca 194  Q
    |||||||||| ||||||||||| || |||||||||| |||||||||||    
T  5925747 caacttcgaggtgaagtttattcggcgacaaacgaatatgattgctca 5925700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 17 - 198
Target Start/End: Original strand, 23854010 - 23854192
Alignment:
Q  17 aacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgttt 115  Q
    ||||||||| | || ||||||||||| ||||||| ||| |||||||   |||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  23854010 aacagatgagactgagttgtcttcgagtccgactcatcaactctagtgcaagctctatcgtctccgggccatggtgattcagaattctatgctattgttt 23854109  T
Q  116 ctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||| ||||| ||||||||| |||||||||||| || |||| ||| ||||||||||| |||||||| |||||||||||    
T  23854110 ctagtattagttatccgttatctttacattccaacttcaaggtgaactttgttaggagacaagcgaacatggttgctcatact 23854192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 40588839 - 40588657
Alignment:
Q  17 aacagatgaaattgggttgtcttcgaatccgacttatctactctaga-taagctctatcgttttcgggccatggtgattcagaattctatgctattgttt 115  Q
    ||||||||| |  |||||||||| || || || | |||||||||||  ||| |||||||||   ||||||||| |||||| |||||||||||||||||||    
T  40588839 aacagatgagaccgggttgtctttgagtctgattcatctactctagtgtaaactctatcgtccccgggccatgatgattctgaattctatgctattgttt 40588740  T
Q  116 ctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
     |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||||| ||||||    
T  40588739 atagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatgattgcacatact 40588657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 83 - 198
Target Start/End: Original strand, 11870409 - 11870524
Alignment:
Q  83 gccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaa 182  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||| ||||    
T  11870409 gccatggtgattcggatttctatgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgttaggagacaagcgaa 11870508  T
Q  183 catgattgctcatact 198  Q
    |||| |||||||||||    
T  11870509 catggttgctcatact 11870524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 7127289 - 7127483
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||||||||||||  |  |||||| |||||| || ||||   ||||| |||   ||||||| |||| | ||||||||||||||| || |||||    
T  7127289 tttgctgatgtgaacagatgggaccgggttgccttcgagtctgactatgctactttagtgcaagctctttcgtctccgggccatggtgatttagtattct 7127388  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||| ||||||||| ||||||||||||||||||||||| ||||||||||| ||  |||||||| ||||||||||| ||||||||||||||||||||    
T  7127389 atgttattgtttcaagtattatttatcagttatctttacattccaactttgatgtgaagtttgttaggagacaagcgaacatgattgctcatact 7127483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 33642859 - 33642691
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat--aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    |||||||||| | ||| ||| |||||||||| ||  ||||||| |||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33642859 ggttgtcttcaagtccaactcatctactcta-atgcaagctctgtcgtctccgggccatggtgattcagaattcaatgatattgtttctagtattattta 33642761  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||||||| |||||||||||| ||  ||||||| ||||||||||| |||||||| ||| |||||||    
T  33642760 tcagttatctttacattccaacttcaaggcgaagtttgttaggagacaagcgaacatggttgttcatact 33642691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 598333 - 598164
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||| | || |||||| |||||||||   |||||||||||| ||| || |||||||||||  | |||||||||||||||||||||||||||||    
T  598333 gggttgtcttcaagtcggacttagctactctagtgcaagctctatcgtcttcaggtcatggtgattcgaagttctatgctattgtttctagtattattta 598234  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    | |||||||||| |||| |||||||| | |||| ||| ||||||||||| |||||||| |||||||||||    
T  598233 ttagttatctttacatttcaacttcgtggtgaaatttgttaggagacaagcgaacatggttgctcatact 598164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 13415165 - 13415283
Alignment:
Q  80 cgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaac 179  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||||| || ||||||||  |||||||||| |    
T  13415165 cgggccatggtgattctgaattttatgctattgtttttagtattatttatcaattatctttacattccaacttcaaggtgaagtttgctaggagacaagc 13415264  T
Q  180 gaacatgattgctcatact 198  Q
    ||||||| |||||||||||    
T  13415265 gaacatggttgctcatact 13415283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 478177 - 477984
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||| ||||||| |||||  |  ||||| |||||||||| ||||   |||||||||   |||||||||||| | ||||  |||||||||| | ||| |    
T  478177 tttgctaatgtgaatagatgggaccgggttatcttcgaatctgactctactactctagtgcaagctctatcgtctccgggttatggtgattcggtatttt 478078  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||| ||||||||||| ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||    
T  478077 atgatattgtttctaatattatttatcagttatctttacattccaacttcaaggtgaagtttgttaggagacaagcgaacatggttgctcatac 477984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 3606796 - 3606666
Alignment:
Q  68 ctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttat 167  Q
    ||||||||| |  ||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| |    
T  3606796 ctctatcgtctcagggtcatggtgacttggaattctatgctattgtttctagtattatttatcagttatctttacattctaacttcgaggtgaagtttgt 3606697  T
Q  168 taggagacaaacgaacatgattgctcatact 198  Q
    |||||||||| |||| ||| ||| |||||||    
T  3606696 taggagacaagcgaatatggttgttcatact 3606666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 8451241 - 8451050
Alignment:
Q  8 gctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatg 106  Q
    |||||||||||| ||||  |  ||||||||||||| || |||| ||||||| |||   ||||| |||||| | | || ||||||||||| ||||| ||||    
T  8451241 gctgatgtgaacggatgggaccgggttgtcttcgagtctgactcatctactttagtgcaagctttatcgtctccaggtcatggtgattcggaattttatg 8451142  T
Q  107 ctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
     |||||| ||||||||||| |||||||||||||| ||||| ||||||||| |||||||| ||| ||||||| |||||||| ||| |||||||    
T  8451141 ttattgtgtctagtattatntatcagttatctttacattcaaacttcgaggtgaagtttgttangagacaagcgaacatggttgttcatact 8451050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 185651 - 185532
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||||| |||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  |||||| || ||||    
T  185651 aagctctttcgtctccggaccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttacatt-cacattcgaggtgtagtt 185553  T
Q  165 tattaggagacaaacgaacat 185  Q
    | ||||||||||| |||||||    
T  185552 tgttaggagacaagcgaacat 185532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 37712200 - 37712333
Alignment:
Q  64 taagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagt 163  Q
    |||||||||| || ||||| | ||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| ||||||||  ||||||    
T  37712200 taagctctattgtcttcggac-atggtgattcagaatactatgctattgtttctagtattatttatgagttatctttacattctaacttcgatgtgaagt 37712298  T
Q  164 ttattaggagacaaacgaacatgattgctcatact 198  Q
     | ||| ||||||  | |||||| |||||||||||    
T  37712299 ctgttaagagacatgcaaacatggttgctcatact 37712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 9496908 - 9497038
Alignment:
Q  68 ctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgaga-tgaagttta 166  Q
    ||||||||| |||| | |||||||| |  |||||||||| ||||||| |||  |||||||||| || || ||| ||| |||||||| ||| |||||||||    
T  9496908 ctctatcgtcttcgagtcatggtgacttggaattctatgttattgttgctaacattatttatctgtgatatttacatcccaacttc-agagtgaagttta 9497006  T
Q  167 ttaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||| |||||||  ||||| |||||    
T  9497007 ttaggagacaagcgaacatagttgcttatact 9497038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 36194626 - 36194550
Alignment:
Q  120 tattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||  ||||||||  ||| ||| ||||||||||||||| |||||||||||   |||||| |||||||||    
T  36194626 tattatttatcgattatctttatatttcaatttcgagatgaagtttgttaggagacaagaaaacatggttgctcata 36194550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Complemental strand, 36195031 - 36194995
Alignment:
Q  92 attcagaattctatgctattgtttctagtattattta 128  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  36195031 attcggaattctatactattgtttctagtattattta 36194995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 12130759 - 12130565
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||  || ||||| ||| ||||| ||||||| || |||| |||||||||||   |||||||||| | |||||| |||||||||||||||||||    
T  12130759 tttgctgatgcaaatagatggaatcgggttatcttcgagtctgactcatctactctagtccaagctctatcatcttcgggacatggtgattcagaattct 12130660  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||| ||| ||||||| |||||||| |||||||||||    
T  12130659 atgctattatttctagtattatttatcagttatatttacattccaacttcgaggtgaagtttgttatgagacaagcgaacatggttgctcatact 12130565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 177
Target Start/End: Complemental strand, 1418103 - 1417929
Alignment:
Q  4 atttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattc 102  Q
    |||||||||||  ||||||||  | |||||||||||||| || |||| ||||||||||| | ||||||||| || |  || | |||||||||||||||||    
T  1418103 atttgctgatgcaaacagatgggactgggttgtcttcgagtctgactcatctactctagttcaagctctattgtctctggactatggtgattcagaattc 1418004  T
Q  103 tatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaa 177  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| |||||||||||    
T  1418003 tatgctattgtttctagtattatttatcaattatctttacattccaacttcgaggtgaagtttgttaggagacaa 1417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 34696025 - 34695831
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||| || |||||  |  ||||||||||||| |||||||   |||||||||   ||||  |||||| | |||| ||||||||||||||||| |    
T  34696025 tttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaatttt 34695926  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  34695925 atgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 34695831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 34718437 - 34718243
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||| || |||||  |  ||||||||||||| |||||||   |||||||||   ||||  |||||| | |||| ||||||||||||||||| |    
T  34718437 tttgctgatgtcaatagatgggaacgggttgtcttcgagtccgactccgctactctagtgcaagcgttatcgtctccgggtcatggtgattcagaatttt 34718338  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||    
T  34718337 atgctattgtttctagtataatttaccagttatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcatact 34718243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 88650 - 88819
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| ||||||| |||||||||||   |||||||||||| |   |  |||||||||||||||||||||||||||||||| |||||||||||    
T  88650 gggttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcaagatcatggtgattcagaattctatgctattgtttccagtattattta 88749  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||| |||| |||||||||||| |  ||||||||||| |||||||| |||||||| |||||||||||    
T  88750 tcagttagctttacattccaacttcaacgtgaagtttatttggagacaagcgaacatggttgctcatact 88819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 9710082 - 9710215
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||||||||||   |||| |||||| ||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  9710082 aagctctatcgtcagcgggacatggtaattcataattctatgcaattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtt 9710181  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||||||| |||||||| |||||||||||    
T  9710182 tgttaggagacaagcgaacatggttgctcatact 9710215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 13109964 - 13109796
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttat 129  Q
    |||||||||||| |||||||  ||||||||||   |||||||||||| |||||||||||||||||  ||||| || ||||||||||| ||||||||||||    
T  13109964 ggttgtcttcgagtccgactcttctactctagtggaagctctatcgtcttcgggccatggtgatttggaattataagctattgtttccagtattatttat 13109865  T
Q  130 cagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||| ||||||||| | ||| |||||||| | |||||||||||||||||  ||| |||||||    
T  13109864 cagttatctttacattccaacgttgaggtgaagtttgtcaggagacaaacgaacatagttgttcatact 13109796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 11292157 - 11291991
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttat 129  Q
    ||||||||| || ||||||| |||||||||||   |||||||||||||||||| ||||| ||||||| |||| |||| |||||||| |||||||||||||    
T  11292157 ggttgtctttgagtccgactcatctactctagtgcaagctctatcgttttcgg-ccatgatgattcaaaattttatgttattgtttatagtattatttat 11292059  T
Q  130 cagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||| | |||| ||||||| || |||||||| ||||||||| | |||||||| |||||||||||    
T  11292058 cagttatctatacatt-caacttcaaggtgaagtttgttaggagacgagcgaacatgtttgctcatact 11291991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 18344332 - 18344221
Alignment:
Q  87 tggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatg 186  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| || |||| ||| |||||||| || ||||||||    
T  18344332 tggtgatttagaattctatgatattgtttctagtattaattatcagttatctttacattccaacttcaaggtgaaatttgttaggagataagcgaacatg 18344233  T
Q  187 attgctcatact 198  Q
     |||||||||||    
T  18344232 gttgctcatact 18344221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 14827150 - 14827339
Alignment:
Q  9 ctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgc 107  Q
    ||||| |||| |||||| || | |||||||| ||||| |||||| |||||||||   |||||||||||| || ||| |||||||||||  ||||||||||    
T  14827150 ctgatatgaatagatgagatcgagttgtctttgaatctgacttagctactctagtgcaagctctatcgtgtttgggtcatggtgattcgaaattctatgc 14827249  T
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||| ||| || |||||| ||| |||||||||| ||||||||||||||| | |||||  ||| || ||||||||||||| |||||||||||    
T  14827250 tattatttataatattatgtattagttatctttacattccaacttcgaggtaaagttagttaaga-acaaacgaacatggttgctcatact 14827339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 35158892 - 35158772
Alignment:
Q  78 ttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgag--atgaagtttattaggagac 175  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||| ||  ||||||||| ||| |||||    
T  35158892 ttcgggccatgatgattcagaattctatgctattgtttctattattatttatcaattatttttacattccaacttcaaggcatgaagtttgttatgagac 35158793  T
Q  176 aaacgaacatgattgctcata 196  Q
    || |||||||  |||||||||    
T  35158792 aagcgaacatagttgctcata 35158772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 44017358 - 44017245
Alignment:
Q  85 catggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaaca 184  Q
    |||||| ||| |||||| ||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||||| | |||||||||||   ||||    
T  44017358 catggtcattaagaattatatgccattgtttcttgtattatttatcagttatcttttcattctaacttcgatatgaagtgtgttaggagacaagtaaaca 44017259  T
Q  185 tgattgctcatact 198  Q
    |  |||||||||||    
T  44017258 tagttgctcatact 44017245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 26198842 - 26198942
Alignment:
Q  98 aattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||| |||||||| |||||  ||||  ||||||| || |||||||    
T  26198842 aattctatgctattgtttctagtattatttaccagttatctttacatttcaactttgaggtgaagtttgttaggtaacaagtgaacatggtttctcatac 26198941  T
Q  198 t 198  Q
    |    
T  26198942 t 26198942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 22845602 - 22845723
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| |||||||||  |  ||||||||||||| ||| ||| |||||||||||   |||||||||||| | | |  |||||||||||||||||||    
T  22845602 tttgctgatgcgaacagatgggaccgggttgtcttcgagtccaactaatctactctagtgcaagctctatcgtctccagatcatggtgattcagaattct 22845701  T
Q  104 atgctattgtttctagtattat 125  Q
    | ||||||||||||||||||||    
T  22845702 aggctattgtttctagtattat 22845723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 10244580 - 10244497
Alignment:
Q  115 tctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||| | ||||| ||||  |||||||||||||| |||||||||||| | | |||  |||||||||||||||||||    
T  10244580 tctagtattatttctgagttagctttagattccaacttcgaggtgaagtttattaagcggcaagtgaacatgattgctcatact 10244497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 25552312 - 25552405
Alignment:
Q  105 tgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||| |||||| ||||||||||||||||| ||| |||| ||| ||  ||||||| ||| ||| |||||||  ||||||| |||||||||||    
T  25552312 tgctattatttctaatattatttatcagttatttttacatttcaattttaagatgaaatttgttaagagacaagtgaacatggttgctcatact 25552405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 195
Target Start/End: Complemental strand, 36445557 - 36445449
Alignment:
Q  87 tggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatg 186  Q
    ||||||||| || |||| || | ||||||||  |||||||| ||| || ||||| ||||||||||||||| ||||||||||||    ||||||||||||     
T  36445557 tggtgattccgagttctttgttgttgtttctcatattatttttcaattctctttacattccaacttcgaggtgaagtttattaaacaacaaacgaacata 36445458  T
Q  187 attgctcat 195  Q
     ||||||||    
T  36445457 gttgctcat 36445449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 4268190 - 4268359
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||| ||||||| ||||||| |||||||||||   |||||||||| | | |||||||||||||||| |||||||||||||||||||||||||||| ||     
T  4268190 gggttttcttcgagtccgactcatctactctagtgcaagctctatcatctccgggccatggtgattcggaattctatgctattgtttctagtattaattc 4268289  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||| |||||||| |||||||||||    
T  4268290 tcagttatctttacattccaacttcaaggtgaagtttattaggagacaagcgaacatggttgctcatact 4268359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 20205048 - 20205215
Alignment:
Q  32 gttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatc 130  Q
    ||||||||||| ||||||| |||||||||||   |||||||||| | | |||| |||||||||||| |||||||||||||||||||||||||||| ||||    
T  20205048 gttgtcttcgagtccgactcatctactctagtgcaagctctatcctctccgggtcatggtgattcaaaattctatgctattgtttctagtattatatatc 20205147  T
Q  131 agttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||||| |||||||||||| || |||||||| ||||||||||| |||||||| |||||||||||    
T  20205148 agttatctttacattccaacttctaggtgaagtttgttaggagacaagcgaacatggttgctcatact 20205215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 25730874 - 25731068
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    |||||||||| |||||||||  | || ||||||||||| ||||||| |||||||||||   |||||||||||| |  ||| |||||||||| ||||||||    
T  25730874 tttgctgatgcgaacagatgggactgagttgtcttcgagtccgactcatctactctagtgcaagctctatcgtctcagggtcatggtgattaagaattct 25730973  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||| ||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||| |||||||| || |||||||| |||||||||||    
T  25730974 atgttattgtttctagtattatttatcagttatatttacattccaacttccaggtgaagtttgttaggagataagcgaacatggttgctcatact 25731068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 12660443 - 12660576
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||| ||||| ||||||||| |||||||    
T  12660443 aagctctatcgtcttcgggccacggtgattcagaattctatgatattgtttctagtattatttttcagttatgtttacattctaacttcgagctgaagtt 12660542  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||||||| ||||||||| ||||||||||    
T  12660543 tgttaggagacaagcgaacatgactgctcatact 12660576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 26597553 - 26597386
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| ||||||| | |||||||||   |||| ||||||| | |||||||||||||||| ||||| |||| ||||||||||||||||||||     
T  26597553 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccgggccatggtgattcggaattttatgttattgtttctagtattatttt 26597454  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    ||| |||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||    
T  26597453 tcaattatctttacattccaacttcgaggtgaagtttgttaggagacaagcgaacatggttgctcata 26597386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 41940833 - 41940664
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| ||||||| | |||||||||   || ||||||||| |  || |||| ||||||||||||||||||||||||||||||||||||||||    
T  41940833 gggttgtcttcgagtccgactcaactactctagtgcaaactctatcgtctctggaccattgtgattcagaattctatgctattgtttctagtattattta 41940734  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
     | ||||||||| ||||||||||||||| |||||||| |||||||||||  ||||||||||||| |||||    
T  41940733 ccggttatctttacattccaacttcgaggtgaagtttgttaggagacaagagaacatgattgctaatact 41940664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 30 - 196
Target Start/End: Original strand, 8388177 - 8388344
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||||| ||||||| | |||||||||   |||| ||||||| | | |||||||||||||||||||| |||||||||||||| ||||||||||     
T  8388177 gggttgtcttcgagtccgactcagctactctagtgcaagcgctatcgtctccaggccatggtgattcagaattttatgctattgtttccagtattatttt 8388276  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||| ||||| |||||||||||||||  ||||||| ||||||||||| |||||||| |||||||||    
T  8388277 tcagttttctttacattccaacttcgaggggaagtttgttaggagacaagcgaacatggttgctcata 8388344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 15988806 - 15988676
Alignment:
Q  68 ctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttat 167  Q
    ||||||||| ||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |    
T  15988806 ctctatcgtcttcaggccatggtgattcggaattctatgttattgtttctagtattatttatcagttatctttacattacaacttcgaggtgaagtttgt 15988707  T
Q  168 taggagacaaacgaacatgattgctcatact 198  Q
    |||||||||| |  ||||| |||||||||||    
T  15988706 taggagacaagcagacatggttgctcatact 15988676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 27532960 - 27532845
Alignment:
Q  71 tatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattag 170  Q
    |||||| | |||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||    
T  27532960 tatcgtctccgggtcatggtgattcagaattctttgctattgtttcaagtattatttatcagttatctttacattccaacttcgaggtgaagtttgttag 27532861  T
Q  171 gagacaaacgaacatg 186  Q
    ||||||| ||||||||    
T  27532860 gagacaagcgaacatg 27532845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 27292500 - 27292694
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||  ||||||||  |  ||||||||||||| | ||||| |||| ||||||   || ||||||||| | | |||||||||||||  ||||| |    
T  27292500 tttgctgatgataacagatgggaccgggttgtcttcgagttcgactcatctgctctagtgcaaactctatcgtctccaggccatggtgatttggaatttt 27292599  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |  |||||||||| ||||||||| |||||||| |||||||||||    
T  27292600 atgctattgtttctagtattaattatcagttatctttacattccaacttcaaagtgaagtttatcaggagacaagcgaacatggttgctcatact 27292694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 23074959 - 23075090
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||| |||||| ||||| ||||||||||||| ||||||||| |||||||| |||||||||||||||||||| ||| |||||||||||  || |||||||    
T  23074959 aagctttatcgtcttcggtccatggtgattcataattctatgttattgtttatagtattatttatcagttatgtttacattccaactttaaggtgaagtt 23075058  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||| |||||||| |||||||||    
T  23075059 tgttaggagacaagcgaacatggttgctcata 23075090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 156
Target Start/End: Complemental strand, 34652375 - 34652223
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||| ||||||||||||||  || |||||||||||||  ||||||   |||||||||   |||||||| ||| |  ||||||||||||||||||||| |    
T  34652375 tttgccgatgtgaacagatgggatcgggttgtcttcgagcccgactcgactactctagtgcaagctctaccgtctctgggccatggtgattcagaattat 34652276  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgag 156  Q
    ||| |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  34652275 atgttattgtttctagtattatttatcaattatctttacattccaacttcgag 34652223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 32632606 - 32632775
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctaga-taagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    |||||||||| || || |||| ||||||| |||  |||||| |||||| | || ||||| ||||||||||||||||||  |||||||||| |||||||||    
T  32632606 gggttgtctttgagtctgactcatctactttagtgtaagctttatcgtctccgagccatagtgattcagaattctatgacattgtttctaatattattta 32632705  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |  ||||||||| ||||| ||||||||| ||| |||||||| ||||||| |||||||  |||| ||||||    
T  32632706 tttgttatctttacattctaacttcgaggtgacgtttattatgagacaagcgaacatagttgcccatact 32632775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 198
Target Start/End: Complemental strand, 30222930 - 30222767
Alignment:
Q  34 tgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcag 132  Q
    |||||||||||| |||| | |||||||||   |||| ||||||| |||||| || |||||||| ||||||||||||||||||| ||| ||  |||||||     
T  30222930 tgtcttcgaatctgactcagctactctagtgcaagcgctatcgtcttcgggtcacggtgattcggaattctatgctattgtttatagaat--tttatcaa 30222833  T
Q  133 ttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||| ||||| ||||| ||  |||||||| ||| ||||||  | ||||||||||||||||||    
T  30222832 ttatctttacattctaactttgatgtgaagtttgttaagagacatgcaaacatgattgctcatact 30222767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 22767269 - 22767200
Alignment:
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    |||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  22767269 tcagttatctttacattccaacttcgaggtgaagtttgttaggagacaaacgaacatggttgctcatact 22767200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 31908420 - 31908323
Alignment:
Q  101 tctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||| || ||||||||||||||||||||  |||| |||||| |||||||||||| ||||  || |||| |||||| |||||||||||    
T  31908420 tctatgctattgtttataatattatttatcagttatcttcacatttcaactttgagatgaagtttgttagtcgataaacaaacatggttgctcatact 31908323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 11375528 - 11375449
Alignment:
Q  119 gtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||| |||||||||| |||||||||| |||| |||||||| ||| ||||||| |||||||  |||||||||||    
T  11375528 gtattatttatgagttatctttacattccaactccgaggtgaagtttgttaagagacaagcgaacatagttgctcatact 11375449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 30573698 - 30573606
Alignment:
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||| ||||||||||||||||||||||||  |||  || || ||| |||| ||| |||| |||||| |||||||| ||| |||||    
T  30573698 atgctattgtttttagtattatttatcagttatctttatattttaattttgaggtgaaatttgttagaagacaagcgaacatggttgttcata 30573606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 14823754 - 14823665
Alignment:
Q  108 tattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatac 197  Q
    ||||||||||  |||||||||| |||||  ||| ||||||| |||  |||||||||||||| || |||||| ||| ||| ||||||||||    
T  14823754 tattgtttctcatattatttatgagttagttttacattccatctttaagatgaagtttattcggcgacaaatgaatatggttgctcatac 14823665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 26076484 - 26076538
Alignment:
Q  142 cattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcata 196  Q
    |||||||||||| || |||||||| ||||||||||| | |||||| |||||||||    
T  26076484 cattccaacttcaaggtgaagtttgttaggagacaagcaaacatggttgctcata 26076538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 28107266 - 28107399
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||    
T  28107266 aagctctatcgtctccgggccatggtgattcagaattctatgttattgtttctagtattatttattagttatctttacattccaacttcgagctgtagtt 28107365  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||||||| | |||||| |||||||||||    
T  28107366 tgttaggagacaaccaaacatggttgctcatact 28107399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 65 - 198
Target Start/End: Original strand, 14680289 - 14680422
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||| | | |||||  |||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  14680289 aagctctatcatctccgggcagtggtgattcaaaattctctgctattgtttctagtattatttatcagttatctttacattccaacttcgaggtgaagtt 14680388  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||||||  |||||||| |||||||||||    
T  14680389 tgttaggagacatgcgaacatggttgctcatact 14680422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 15606090 - 15605924
Alignment:
Q  30 gggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattattta 128  Q
    ||||||||||| | ||||||| | |||||||||   |||||||||||| |   || |||||||||||||||  |||||||||||||||||||||||||||    
T  15606090 gggttgtcttcaagtccgactcagctactctagtgcaagctctatcgtctctaggtcatggtgattcagaacactatgctattgtttctagtattattta 15605991  T
Q  129 tcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcat 195  Q
    |||||||||||| ||||||||||||||| |||| ||| |||| |||||| |||||||| ||||||||    
T  15605990 tcagttatctttacattccaacttcgaggtgaattttgttagcagacaagcgaacatggttgctcat 15605924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 198
Target Start/End: Complemental strand, 11731729 - 11731596
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    ||||||||| || | |||||||||||| ||| || |||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||    
T  11731729 aagctctattgtctccgggccatggtggttcggagttctatgctactgtttctagtaatatttatcagttatctttacattccaacttcgaggtgaagtt 11731630  T
Q  165 tattaggagacaaacgaacatgattgctcatact 198  Q
    | ||||||| ||| |||||||| |||||||||||    
T  11731629 tgttaggaggcaagcgaacatggttgctcatact 11731596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 65 - 196
Target Start/End: Complemental strand, 34104525 - 34104394
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||| ||||||| | ||| |||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||| |||||||    
T  34104525 aagcgctatcgtctccggaccatggtgattcagaattttatgctattgtttttagtattatttttcagttatctttacattcgaacttcgaggtgaagtt 34104426  T
Q  165 tattaggagacaaacgaacatgattgctcata 196  Q
    | ||||||||||| | |||||| |||||||||    
T  34104425 tgttaggagacaagcaaacatggttgctcata 34104394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 198
Target Start/End: Complemental strand, 15053270 - 15053102
Alignment:
Q  31 ggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttat 129  Q
    |||||||||||| ||||||| | |||||||||   || | ||||||| |||||||||||||||||| |||||||||||| ||| || || ||||||||||    
T  15053270 ggttgtcttcgagtccgactcagctactctagtgcaaacgctatcgtcttcgggccatggtgattcggaattctatgctgttgcttataatattatttat 15053171  T
Q  130 cagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    || |||| ||| |||||||| |||||| |||||||| |||| |||||| | ||||||||||||||||||    
T  15053170 caattatatttacattccaatttcgaggtgaagtttgttagaagacaagcaaacatgattgctcatact 15053102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 19691000 - 19690809
Alignment:
Q  5 tttgctgatgtgaacagatgaaattgggttgtcttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattct 103  Q
    ||||||||||||||||||||  |  | ||||||||||| || |||| | ||||| |||   |||||||||||| |  | | ||||||||||  |||||||    
T  19691000 tttgctgatgtgaacagatgtgaccgagttgtcttcgagtctgactcagctactttagtgcaagctctatcgtctctgagtcatggtgatttggaattct 19690901  T
Q  104 atgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcat 195  Q
    |||  |||||||||||||||||||||||||||||||| ||||  ||||| ||| |||||||| |||||| |||| |||||||||||||||||    
T  19690900 atgtcattgtttctagtattatttatcagttatctttacatttaaactttgaggtgaagtttgttaggaaacaagcgaacatgattgctcat 19690809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 27443074 - 27443191
Alignment:
Q  82 ggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcatt---ccaacttcgagatgaagtttattaggagacaaa 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||   ||||||| ||| |||||||| |||||||| ||     
T  27443074 ggccatggtgattcagaattttatgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaag 27443173  T
Q  179 cgaacatgattgctcata 196  Q
    |||||||| |||||||||    
T  27443174 cgaacatggttgctcata 27443191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 21944668 - 21944555
Alignment:
Q  85 catggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaaca 184  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||  |||||||| |||  |||||| ||| ||    
T  21944668 catggtaattcagaattctatgctattgtttctagtattatttatcagttatttttatattccaacttcgatgtgaagtttgttaaaagacaagcgatca 21944569  T
Q  185 tgattgctcatact 198  Q
    |  |||||||||||    
T  21944568 ttgttgctcatact 21944555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 29368116 - 29367996
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtt 164  Q
    |||||||||||| | |||| ||| |||||||  ||||||||||||||| ||||||||||| ||||||||||||||| | |||||||||| || | |||||    
T  29368116 aagctctatcgtctccgggtcatagtgattcgtaattctatgctattgcttctagtattagttatcagttatctttaccttccaacttcaaggtaaagtt 29368017  T
Q  165 tattaggagacaaacgaacat 185  Q
    | |||||| |||| |||||||    
T  29368016 tgttaggaaacaagcgaacat 29367996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 3100415 - 3100496
Alignment:
Q  108 tattgtttctagtattatttatcagttatctttg-cattccaacttcgagatgaagtttattaggagacaaacgaacatgat 188  Q
    |||||||| ||||||||||||||||||||||||  ||||||||||| ||| |||||||| ||||||||||| ||||||||||    
T  3100415 tattgtttatagtattatttatcagttatcttttacattccaactttgaggtgaagtttgttaggagacaagcgaacatgat 3100496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 30802051 - 30801984
Alignment:
Q  65 aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcag 132  Q
    |||||||||||||| || |||||||||| |  |||||||||| |||||||||||||||||||||||||    
T  30802051 aagctctatcgtttccgagccatggtgacttggaattctatgttattgtttctagtattatttatcag 30801984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 38 - 198
Target Start/End: Complemental strand, 352 - 191
Alignment:
Q  38 ttcgaatccgacttatctactctagat-aagctctatcgttttcgggccatggtgattcagaattctatgctattgtttctagtattatttatcagttat 136  Q
    ||||| ||||||| |||||||||||   |||||||||| | | | || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  352 ttcgagtccgactcatctactctagtgcaagctctatcatctccaggtcatggtaattcagaattctatgctattgtttctagtattatttatcagttat 253  T
Q  137 ctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    | || ||||||||||||||  |||||||| ||||||||||| |||||| | |||||||||||    
T  252 ccttacattccaacttcgatgtgaagtttgttaggagacaagcgaacacggttgctcatact 191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 344 - 448
Alignment:
Q  92 attcagaattctatgctattgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgc 191  Q
    |||| ||||| |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||    
T  344 attcggaattttatgctattgtttctaatattatttttcagttatctttacattccaacttcgagatgaagtttgttaggagacaagcgaacatggttgc 443  T
Q  192 tcata 196  Q
    |||||    
T  444 tcata 448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 44287 - 44170
Alignment:
Q  82 ggccatggtgattcagaattctatgctattgtttctagtattatttatcagttatctttgcatt---ccaacttcgagatgaagtttattaggagacaaa 178  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||   ||||||| ||| |||||||| |||||||| ||     
T  44287 ggccatggtgattcagaattttatgctattgtttctagtattatatttcagttatctttacattccaccaactttgaggtgaagtttgttaggagagaag 44188  T
Q  179 cgaacatgattgctcata 196  Q
    |||||||| |||||||||    
T  44187 cgaacatggttgctcata 44170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 110 - 198
Target Start/End: Original strand, 20330 - 20418
Alignment:
Q  110 ttgtttctagtattatttatcagttatctttgcattccaacttcgagatgaagtttattaggagacaaacgaacatgattgctcatact 198  Q
    ||||||||||||||||||||||||||||||| |||  |||||| ||| |||||||| ||||||||||| |||| |||||| ||||||||    
T  20330 ttgtttctagtattatttatcagttatctttacatgtcaactttgaggtgaagtttgttaggagacaagcgaatatgattactcatact 20418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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