View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12820_low_9 (Length: 567)
Name: NF12820_low_9
Description: NF12820
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12820_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 39572885 - 39573430
Alignment:
| Q |
20 |
agggattcatgaaggagaaatctgcattgttcattggccttgtccaaaacagatgccc--aagtcggcaatgttatagagacagctatcctacttgataa |
117 |
Q |
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| T |
39572885 |
agggattcatgaaggagaaatctgcattgttcattggccttgtccaaaacagatgcccccaagtcggcaatgttatagagacaggtatcctacttgataa |
39572984 |
T |
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| Q |
118 |
ttgtgctaagtgttaaagattatttttatagaaccacgtgtcttcaactattggcgtagaagttgtcattctactttgataaaagaagtgacggcacaac |
217 |
Q |
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| T |
39572985 |
ttgtgctaagtgttgaagattatttttatagaaccacgtgtcttcaactattggcgtagaagttgtcattctactttgataaaagaagtgacggcacaac |
39573084 |
T |
|
| Q |
218 |
atcaatttagtgaggcgacttcatcgacgaaaaccaaagatgtcattctacttcaataaaagaagttatgacactgtcatcgaacagttggagagtcttc |
317 |
Q |
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| T |
39573085 |
atcaatttagtgaggcgacttcatcgatgaaaaccaaagatgtcattctacttcaataaaagaagtcatgacactgtcatcgaacagttggagagtcttc |
39573184 |
T |
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| Q |
318 |
atctaccgaagtccaagatgtcattctactacgataaaaaagtgatgacatgtggaatcgctctattgaagcaagcgttttcatctacc--gacgtgcaa |
415 |
Q |
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| T |
39573185 |
atctaccaaagtccaagatgtcattctactacgataaaaaagtgatgacatgtggaatcgctctattgaagcaagcgttttcatctaccgagacgtgcaa |
39573284 |
T |
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| Q |
416 |
gatttcattctactttgataaaggtgtgctgaaatctggcatcatctcttgaagtgtcttcatctaccgaagtatgtgatgccattctacttcgataaaa |
515 |
Q |
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| T |
39573285 |
gatttcattctactttgataaaggtgtgctgaaatctggcatcatctcttgaagtgtcttcatctaccgaagtatgtgatgccattctacttcgataaaa |
39573384 |
T |
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| Q |
516 |
gaaaaatgacgcatggcatcactagaatgtttcctcttcatctcac |
561 |
Q |
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| T |
39573385 |
gaagaatgacacatggcatcactagaatgtttcctcttcatttcac |
39573430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 25 - 476
Target Start/End: Original strand, 39567427 - 39567873
Alignment:
| Q |
25 |
ttcatgaaggagaaatctgcattgttcattggccttgtccaaaacagatgccc--aagtcggcaatgttatagagacagctatcctacttgataattgtg |
122 |
Q |
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| T |
39567427 |
ttcatgaaggcgaagtctggattgatcattggtctagtccaaaacagttgcccccaagtcggcaatgttgtttagacaagatgcctacatgataattgtg |
39567526 |
T |
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| Q |
123 |
ctaagtgttaaagattatttttatagaaccacgtgtctt-caactattggcgtagaagttgtcattctactttgataaaagaagtgacggcacaacatca |
221 |
Q |
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| T |
39567527 |
caatttattgaaggtcattattatagaacgaagtgtctttcaactactgacgtacaagacatctttctacttctataaaagaa-tgac---acagagtca |
39567622 |
T |
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| Q |
222 |
atttagtgaggcgacttcatcgacgaaaaccaaagatgtcattctacttcaataaaagaagttatgacactgtcatcgaacagttggagagtcttcatct |
321 |
Q |
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| T |
39567623 |
atttagtgaagcaacttcgtcgacgaaagctaaagatgtttgtctacttcgataaaagaaatgccaacactgtcatcgtactgttggagagtcttcattt |
39567722 |
T |
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| Q |
322 |
accgaagtccaagatgtcattctactacgataaaaaagtgatgacatgtggaatcgctctattgaagcaagcgttttcatctaccgacgtgcaagatttc |
421 |
Q |
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| T |
39567723 |
accgaagtctaagatgtcattctacttcgataaataagtgatgacacatgtaatcactctattgaagca----tcttcatctacagaagttcaagaattc |
39567818 |
T |
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| Q |
422 |
attctactttgataaaggtgtgctgaaatctggcatcatctcttgaagtgtcttc |
476 |
Q |
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| T |
39567819 |
attctacttcgataaagaagtgatgacacatggcatcatctattgaagcgtcttc |
39567873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 473 - 556
Target Start/End: Original strand, 39567929 - 39568012
Alignment:
| Q |
473 |
cttcatctaccgaagtatgtgatgccattctacttcgataaaagaaaaatgacgcatggcatcactagaatgtttcctcttcat |
556 |
Q |
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| T |
39567929 |
cttcatcgacccatgtatgtgatgtcattctactttgataaaagaagaatgacccatggcttcgctagaatggttcctcttcat |
39568012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 470 - 556
Target Start/End: Original strand, 39565175 - 39565261
Alignment:
| Q |
470 |
tgtcttcatctaccgaagtatgtgatgccattctacttcgataaaagaaaaatgacgcatggcatcactagaatgtttcctcttcat |
556 |
Q |
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| T |
39565175 |
tgtcttcatctaccaaagtatgcaatgtaattctacttcgataaaaaaagaatgacacatggcatcgctcaaatgattcctcttcat |
39565261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 480
Target Start/End: Original strand, 39564952 - 39565108
Alignment:
| Q |
319 |
tctaccgaagtccaagatgtcattctactacgataaaaaagtgatgacatgtggaatcgctctattgaagcaagcgttttcatctaccgacgtgcaagat |
418 |
Q |
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| T |
39564952 |
tctaccgaagtccaagatttcattctacttcgataaagaagtgatg-cacatggtatcattctatggaagca----tcttcttctaccgaagtccaagat |
39565046 |
T |
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| Q |
419 |
ttcattctactttgataaaggtgtgctgaaatctggcatcatctcttgaagtgtcttcatct |
480 |
Q |
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| T |
39565047 |
ttcgttctacttcgataaagaggtgatgacatgcggcatcatctacagaagcgtcttcatct |
39565108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 39565023 - 39565079
Alignment:
| Q |
313 |
tcttcatctaccgaagtccaagatgtcattctactacgataaaaaagtgatgacatg |
369 |
Q |
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| T |
39565023 |
tcttcttctaccgaagtccaagatttcgttctacttcgataaagaggtgatgacatg |
39565079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 39564786 - 39564857
Alignment:
| Q |
212 |
cacaacatcaatttagtgaggcgacttcatcgacgaaaaccaaagatgtcattctacttcaataaaagaagt |
283 |
Q |
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| T |
39564786 |
cacaacgtcaatatagtgaagcgacttcgtcagcaaaggccaaagatgtcattctacttcgataaaagaagt |
39564857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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