View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_high_1 (Length: 598)
Name: NF12821_high_1
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Original strand, 46873674 - 46874234
Alignment:
| Q |
19 |
gaagagttactgaggtaaattctccaaaatgttttccctttttatgtgatttgtggttgcttgaaatcacagacgtggcactagacatgacactatgcat |
118 |
Q |
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| T |
46873674 |
gaagagttactgaggtaaattctccaaaatgttttccctttttatgtgatttgtggttgcttgaaatcacagacgcggcactagacatgacactatgcat |
46873773 |
T |
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| Q |
119 |
tgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaacgtgtgtgtgtcttgcattagtcgcgcatcggacataccttcgatct |
218 |
Q |
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| T |
46873774 |
tgaatccaataatagtttgataaaatggactaattgaatgtatgtgttggtaatgtgtgtgtgtcttgcattagtcgcgcatcggacataccttcgatct |
46873873 |
T |
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| Q |
219 |
gaagtgtccatgatacgtatgttaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctatgtgattcggaag |
318 |
Q |
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| T |
46873874 |
gaagtgtccatgatacatatgctaatgttgactaactttatgttgttttgttgctgtttaatagtggaatggtggacaagttagctatgtgattcggaag |
46873973 |
T |
|
| Q |
319 |
gccaatacttcatggatacaaccaaaatggggtgcctcagtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagctctatgattgatg |
418 |
Q |
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| T |
46873974 |
gccaatacttcatggatacaaccaaaatggggtgcctcggtagtgcaattagaccctaatacttgggttcttgagtatcaaaggagctctatgattgatt |
46874073 |
T |
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| Q |
419 |
gtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggcagtttgtggcatttga |
518 |
Q |
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| T |
46874074 |
gtaaaggattgttttctacagcattggagtttatcaagtataggatttcaaggattgtcagcaagatgaagaaagatttctggcagtttgtggcatttga |
46874173 |
T |
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| Q |
519 |
agataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttga |
579 |
Q |
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| T |
46874174 |
agataatcatcaatacaattggttcacaacaacaaactatgggtctaagaccccaacttga |
46874234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 41345835 - 41345799
Alignment:
| Q |
124 |
ccaataatagtttgataaaatggactaattgaatgta |
160 |
Q |
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| T |
41345835 |
ccaataatagtttgagaaaattgactaattgaatgta |
41345799 |
T |
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