View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12821_high_13 (Length: 229)

Name: NF12821_high_13
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12821_high_13
NF12821_high_13
[»] chr1 (10 HSPs)
chr1 (19-215)||(960332-960528)
chr1 (19-215)||(942371-942567)
chr1 (19-215)||(971641-971837)
chr1 (19-215)||(949360-949556)
chr1 (22-215)||(936451-936644)
chr1 (19-215)||(419711-419904)
chr1 (19-215)||(975257-975450)
chr1 (51-215)||(909701-909862)
chr1 (51-213)||(924236-924395)
chr1 (118-213)||(916185-916280)
[»] scaffold0312 (1 HSPs)
scaffold0312 (19-215)||(10667-10860)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 960528 - 960332
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  960528 aattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccac 960429  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  960428 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 960332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 942567 - 942371
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  942567 aattctctttgtgacacacaatagttttgttcttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccac 942468  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  942467 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttg 942371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 971837 - 971641
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  971837 aattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccac 971738  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  971737 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaaagcttttcctcacctttg 971641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 949556 - 949360
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  949556 aattctctttgtgacacacaatagttttgttcttctcacccaatttattcactccttttgctataacatattgttgcaaaccattactatttttatccac 949457  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    |||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  949456 ttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 949360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 215
Target Start/End: Complemental strand, 936644 - 936451
Alignment:
Q  22 tctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttc 121  Q
    ||||||||||||| || | |  ||| ||||| || |||||||||||||| |||||||| || ||||||| ||||||  || | || | ||| | ||||||    
T  936644 tctctttgtgacacactacagctttattcttttctcccaatttcttcacaccttttgccattacatattcttgcaagtcactgctttcttttttcacttc 936545  T
Q  122 tgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  936544 tgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaaagcttttcctctcctttg 936451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 419711 - 419904
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| |||   ||||| | ||| | |||    
T  419711 aattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcac 419807  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    ||||||||||||||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  419808 ttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 419904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 975450 - 975257
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| |||   ||||| | ||| | |||    
T  975450 aattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcac 975354  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    ||||||||||||||| |||||||| || || ||||| ||| | ||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  975353 ttctgttgaaacagcctcaacatttttaccaagtttagaagtcgtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 975257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 51 - 215
Target Start/End: Complemental strand, 909862 - 909701
Alignment:
Q  51 ttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccga 150  Q
    ||||| |||| |||||||||||| |||||||| ||||||||||| ||||||   || | |  ||  ||||||||||||||||  |||||||||||||| |    
T  909862 ttctctcccattttcttcactccgtttgctattacatattgttgtaaacca---ctttctccatttacttctgttgaaacagtgtcaacattgtttccaa 909766  T
Q  151 gtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    | ||| || |||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||    
T  909765 gcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaaagcttttcctctcctttg 909701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 51 - 213
Target Start/End: Complemental strand, 924395 - 924236
Alignment:
Q  51 ttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccga 150  Q
    ||||||||||| ||||| |||||||||||||| | ||||||||| | | ||   || | ||| | ||||||||||||||||||||||||||||||||| |    
T  924395 ttctcacccaacttcttaactccttttgctattatatattgttgtatatca---ctttctttgttcacttctgttgaaacagcttcaacattgtttccaa 924299  T
Q  151 gtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 213  Q
    | || ||| |||||||||||||||| || || ||||| |||||||||  ||||||||| ||||    
T  924298 gcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttcctctcctt 924236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 118 - 213
Target Start/End: Complemental strand, 916280 - 916185
Alignment:
Q  118 cttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctt 213  Q
    ||||||||||||||||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| |||||||||  ||||||||| ||||    
T  916280 cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttcctctcctt 916185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 10860 - 10667
Alignment:
Q  19 aattctctttgtgacaaacaatacttttgttcttctcacccaatttcttcactccttttgctataacatattgttgcaaaccattactatttttatccac 118  Q
    |||||||||||||||| |||| |  |||||||||||||||||| |||||||||||   ||||||   ||||||||| |||   ||||| | ||| | |||    
T  10860 aattctctttgtgacacacaacagctttgttcttctcacccaacttcttcactccagatgctattgtatattgttgtaaa---ttactttctttgttcac 10764  T
Q  119 ttctgttgaaacagcttcaacattgtttccgagtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaaagcttttcctcacctttg 215  Q
    ||||||||||||||| |||||||| || || ||||| ||| ||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||||    
T  10763 ttctgttgaaacagcctcaacatttttaccaagtttagaagtagtgaaatcaaccatagactccaatgatgttacacaaaccttttcctctcctttg 10667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University