View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12821_high_4 (Length: 479)
Name: NF12821_high_4
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 182 - 464
Target Start/End: Complemental strand, 10434480 - 10434198
Alignment:
| Q |
182 |
ccttaacacaacctataatcttattatactaatcacataagcttctcttagaattcatatatttgattttctaaacccaatcaacaaacactaaccaagc |
281 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434480 |
ccttaacacatcctataatcttattatactaatcacataagcttctcttagaattcatatatttgattttctaaacccaatcaacaaacactaaccaagc |
10434381 |
T |
|
| Q |
282 |
ttgcgtttacagttgttcgccacagtaaggacagaacgtgaaatcagccgccacattccgatcacagaaccggcatcgcaatgcgtccggcaacgtcgtt |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434380 |
ttgcgtttacagttgttcgccacagtaaggacagaacgtgaaatcagcagccacattccgatcacagaaccggcatcgcaatgcgtccggcaacgtcgtt |
10434281 |
T |
|
| Q |
382 |
ccaccgctagacggcggcggagggagggaatgcgattgtggaaacatgaacttgcagtcttgacaatacaaaagagtatcttt |
464 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10434280 |
ccaccgctagacggcggtggagggagggaatgcgattgtggaaacatgaacttgcagtcttgacaatacaaaagagtgtcttt |
10434198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 10434605 - 10434544
Alignment:
| Q |
51 |
tactgttaataacaagggggaaaataaacatgtaaaaagtaacatgaatattaattttgtaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10434605 |
tactgttaataacaagggggaaaataaacatgtaaaaagtaacatgaatattaattttgtaa |
10434544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 10434649 - 10434618
Alignment:
| Q |
5 |
aaatgtgaaattagcttaaacaaaaatgcatt |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10434649 |
aaatgtgaaattagcttaaacaaaaatgcatt |
10434618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University