View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_high_5 (Length: 367)
Name: NF12821_high_5
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 48655534 - 48655227
Alignment:
| Q |
1 |
ttgttggataaatgtctacgtctgaga-----gactctgttagggtgatttgaaagtggaaatagtagatgagtgcttatgattataatgtttttgtagt |
95 |
Q |
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| T |
48655534 |
ttgttggataaatgtctacgtctgagtctatcgactctgttagggtgatttgaaagtggaaatagtagatgagtgcttatggttataatgtttttgtagt |
48655435 |
T |
|
| Q |
96 |
tgttcaactataatttcgnnnnnnntatttagtacttaaaaaagttataattgttcaacttttatttcctaaaataatttattttttaat-aagtatttt |
194 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
48655434 |
tgttcaactataatttcgaaaaaaatgtttagtacttaaaaaagttataattgttcaacttt-atttcctaaaataatttattttttaatcaagtat--- |
48655339 |
T |
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| Q |
195 |
ctgcacacaactgcggagaataaactattgattcatatttcgaatagaatcataatgaatgattaaatttaaaatttaatactattgaatgttgaaaact |
294 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48655338 |
ctgcacacaactgcggagaataaactattgattcagatttcgaatagaatcataatgaatgacaaaatttaaaatttaatactattgaatgttgaaaact |
48655239 |
T |
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| Q |
295 |
cacatcctctct |
306 |
Q |
| |
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|||||||||||| |
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| T |
48655238 |
cacatcctctct |
48655227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 14717434 - 14717382
Alignment:
| Q |
302 |
tctctttttgctttctctcttgtgagcagtcactgaaactctaatttcttctc |
354 |
Q |
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|||||||| ||||||||||||||||| ||||| |||||||| ||||||||| |
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| T |
14717434 |
tctcttttccctttctctcttgtgagccgtcaccaaaactctagtttcttctc |
14717382 |
T |
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