View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_high_6 (Length: 325)
Name: NF12821_high_6
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 52629664 - 52629836
Alignment:
| Q |
130 |
gaatagaattatgtgtgataaaaaatttgtgtataatgtgaaagtgattgtcatttcctatcatcttctccattttctattgtctcaatttgct------ |
223 |
Q |
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| T |
52629664 |
gaatagaattatgtgtaataaaaaatttgtgtataatgtgaaagtgattgtcatttcctatcatcttctccattttctattggctcaatttgctcctttc |
52629763 |
T |
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| Q |
224 |
--------accacccacttacggtggtcaaaatctagttgctcaaagtttattatctttcatgcgtaataaat |
288 |
Q |
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| T |
52629764 |
atataataaccacccacttacggtggtcaaaatctagttgctcaaagtttattatctttcatgcgtaataaat |
52629836 |
T |
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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 52629552 - 52629591
Alignment:
| Q |
18 |
acagaaccatgcatgttgtaccgacttcaaaacatcacaa |
57 |
Q |
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| T |
52629552 |
acagaaccatgcatgttgtaccgacttcaaaacatcacaa |
52629591 |
T |
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