View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12821_high_9 (Length: 280)

Name: NF12821_high_9
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12821_high_9
NF12821_high_9
[»] chr8 (3 HSPs)
chr8 (17-273)||(25890961-25891217)
chr8 (225-273)||(18309115-18309163)
chr8 (77-149)||(37718866-37718938)
[»] chr7 (8 HSPs)
chr7 (86-273)||(17506963-17507150)
chr7 (86-273)||(17546064-17546251)
chr7 (74-255)||(15645130-15645311)
chr7 (4-90)||(17504533-17504619)
chr7 (4-90)||(17548595-17548681)
chr7 (74-149)||(551599-551674)
chr7 (84-152)||(8771450-8771518)
chr7 (73-113)||(39694526-39694566)
[»] chr6 (4 HSPs)
chr6 (74-255)||(7956698-7956879)
chr6 (73-171)||(15602321-15602419)
chr6 (73-117)||(14528424-14528468)
chr6 (70-118)||(26513774-26513822)
[»] chr3 (4 HSPs)
chr3 (24-236)||(14853834-14854046)
chr3 (84-158)||(45684186-45684260)
chr3 (70-119)||(17700285-17700334)
chr3 (70-119)||(53941368-53941417)
[»] chr1 (2 HSPs)
chr1 (181-273)||(39584913-39585005)
chr1 (74-152)||(9991072-9991150)
[»] chr5 (3 HSPs)
chr5 (186-242)||(32239704-32239760)
chr5 (84-152)||(3168581-3168649)
chr5 (70-119)||(9724723-9724772)
[»] chr4 (2 HSPs)
chr4 (84-158)||(46639046-46639120)
chr4 (70-119)||(30821779-30821828)
[»] chr2 (2 HSPs)
chr2 (84-158)||(28400606-28400680)
chr2 (73-113)||(2207867-2207907)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 25891217 - 25890961
Alignment:
Q  17 tgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtg 116  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||  |||||  |||||||||||||||||||||| ||||||||||| ||||| ||    
T  25891217 tgtattatatgctcacaactcaggaggtaccgcaggttactcaggttgccgacctaatttggcataatcaggttcctctaaaggtgtcaatctttgcatg 25891118  T
Q  117 gcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccgattctttgtgtatttcggggtgcggccaggtg 216  Q
    |||||| |||||||||||  ||||||||||||||||  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||    
T  25891117 gcgactgctccgtgatcgcctacctactaaatctaatttggcatcacgtggtatacttaaagtggccgattctttgtgtatttcggggtgtggccaggtg 25891018  T
Q  217 gaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  25891017 gaggatgctcgtcatttgtttctctcttgttcttgctttggggagctgtggtctctg 25890961  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 18309115 - 18309163
Alignment:
Q  225 tagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18309115 tagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 18309163  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 37718938 - 37718866
Alignment:
Q  77 ggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatc 149  Q
    ||||||| ||||||||  | ||||||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  37718938 ggcataaacaggttcccttaaaggtgtcaatttttgcttggcggctgctccgtgatcgcttacctaccaaatc 37718866  T

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Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 17506963 - 17507150
Alignment:
Q  86 aggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccga 185  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17506963 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17507062  T
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17507063 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17507150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 17546251 - 17546064
Alignment:
Q  86 aggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccga 185  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17546251 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17546152  T
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17546151 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17546064  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 15645311 - 15645130
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattct 173  Q
    |||||||||| ||| |||| || ||||||||| | ||||| ||||| || |||||||||    | ||||||||||||||| ||||||||||||||||  |    
T  15645311 tttggcataaacagattccactaaaggtgtcagtctttgcttggcggctgctccgtgattaccttcctactaaatctaacttggcatcacgtggtataat 15645212  T
Q  174 taatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 255  Q
    |||||||  || |||| ||||| |||||||||| ||||||||||||||||||  |||||||||| |||| ||||||||||||    
T  15645211 taatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcatcatttgtttttctcttgtccttgcttt 15645130  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 17504533 - 17504619
Alignment:
Q  4 tctgctcgttcactgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggtt 90  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||  || ||  |||||||||||||||||    
T  17504533 tctgttcgttctgtgtattatatgctcacatctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17504619  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17548681 - 17548595
Alignment:
Q  4 tctgctcgttcactgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggtt 90  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||  || ||  |||||||||||||||||    
T  17548681 tctgttcgttctgtgtattatatgctcacatctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17548595  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 551599 - 551674
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatc 149  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||| ||  |||||||||| || ||||| |||||    
T  551599 tttggcataaacaggttcctttaaaggtgtcaatttttgcttggcggctgatccgtgatcgcttgcctaccaaatc 551674  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 8771518 - 8771450
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| ||||    
T  8771518 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaa 8771450  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 39694566 - 39694526
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgc 113  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  39694566 gtttggcacaaacaggttcctcttaaggtgtctatttttgc 39694526  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 7956698 - 7956879
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattct 173  Q
    |||||||||| |||||||| || ||||||||| | ||||| |||||  | |||||||||||  | ||||||||||||||| ||||||| ||||||||  |    
T  7956698 tttggcataaacaggttcccctaaaggtgtcagtctttgcttggcggttgctccgtgatcgccttcctactaaatctaacttggcatctcgtggtataat 7956797  T
Q  174 taatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 255  Q
    |||||||  || |||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7956798 taatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcatgtccttgcttt 7956879  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 15602419 - 15602321
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtatt 171  Q
    ||||||||||| || |||||  |||||||||| |||||||| |||||  | || ||||||||||| || ||||| |||||| | ||| | |||||||||    
T  15602419 gtttggcataaccatgttccgattaaggtgtctatttttgcttggcggttgcttcgtgatcgatttcccactaagtctaacttagcaacccgtggtatt 15602321  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 14528468 - 14528424
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgcgtgg 117  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||    
T  14528468 gtttggcataatcaggttcctttgaaggtctcagtttttgcgtgg 14528424  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 26513822 - 26513774
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggc 118  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| ||||    
T  26513822 cttgtttggcataagcaggttcctctaaaggtttccatttttgcttggc 26513774  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 14854046 - 14853834
Alignment:
Q  24 tatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgacta 123  Q
    |||||||||| ||||||||| ||||||||||| ||||| ||| ||  |  |||||||||| |||||||  || ||||||||| | ||||| ||||| ||     
T  14854046 tatgctcacaactcaggaggtaccgcaggttactcaggatgtcgatttgatttggcataaacaggttctcctaaaggtgtcagtctttgcttggcggctg 14853947  T
Q  124 ctccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatg 223  Q
    |||||||||||    ||||||||||||||| ||||||||||||||||  ||||||||   | |||| ||||| |||||||||| || |||||||||||||    
T  14853946 ctccgtgatcgtcctcctactaaatctaacttggcatcacgtggtataattaatgtggatgcttctatgtgtgtttcggggtgtggtcaggtggaggatg 14853847  T
Q  224 ctagtcatttgtt 236  Q
    || ||||||||||    
T  14853846 ctcgtcatttgtt 14853834  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 45684260 - 45684186
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  45684260 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 45684186  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 17700334 - 17700285
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  17700334 cttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcg 17700285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 53941417 - 53941368
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||    
T  53941417 cttgtttggcataagcaggttcctctgaaggtatccatttttgcatggcg 53941368  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 39585005 - 39584913
Alignment:
Q  181 accgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39585005 accgattctttgtgtattttggggtgtggccaggtggaggatgctcgtcatttgtttctctcgtgtccttgctttagggagttgtggtctctg 39584913  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 9991150 - 9991072
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| |||||||| ||||||||| | |||||||| ||||| || || |||||||   | ||||||||||||||    
T  9991150 tttggcataaacaggttccgcttaaggtgcctatttttgcttggcggctgcttcgtgatcaccttcctactaaatctaa 9991072  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 32239760 - 32239704
Alignment:
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctc 242  Q
    |||| ||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  32239760 ttctatgtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtttctctc 32239704  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 3168581 - 3168649
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| | ||||| ||||||||||||||||| ||  |||| |||||||||||||| ||| ||||    
T  3168581 tcaggttcctttgaaggtttcaatttttgcgtggcggcttatccgagatcgattacctacgaaagctaa 3168649  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 9724723 - 9724772
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| || ||||| |||||||| ||||||||||| |||||    
T  9724723 cttgtttggcataaacatgttccacttaaggtctcaatttttgcttggcg 9724772  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 46639046 - 46639120
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  46639046 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 46639120  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 30821779 - 30821828
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  30821779 cttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcg 30821828  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 28400606 - 28400680
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  28400606 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 28400680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 2207867 - 2207907
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgc 113  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  2207867 gtttggcacaaacaggttcctcttaaggtgtctatttttgc 2207907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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