View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12821_low_12 (Length: 280)

Name: NF12821_low_12
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12821_low_12
NF12821_low_12
[»] chr8 (3 HSPs)
chr8 (17-273)||(25890961-25891217)
chr8 (225-273)||(18309115-18309163)
chr8 (77-149)||(37718866-37718938)
[»] chr7 (8 HSPs)
chr7 (86-273)||(17506963-17507150)
chr7 (86-273)||(17546064-17546251)
chr7 (74-255)||(15645130-15645311)
chr7 (4-90)||(17504533-17504619)
chr7 (4-90)||(17548595-17548681)
chr7 (74-149)||(551599-551674)
chr7 (84-152)||(8771450-8771518)
chr7 (73-113)||(39694526-39694566)
[»] chr6 (4 HSPs)
chr6 (74-255)||(7956698-7956879)
chr6 (73-171)||(15602321-15602419)
chr6 (73-117)||(14528424-14528468)
chr6 (70-118)||(26513774-26513822)
[»] chr3 (4 HSPs)
chr3 (24-236)||(14853834-14854046)
chr3 (84-158)||(45684186-45684260)
chr3 (70-119)||(17700285-17700334)
chr3 (70-119)||(53941368-53941417)
[»] chr1 (2 HSPs)
chr1 (181-273)||(39584913-39585005)
chr1 (74-152)||(9991072-9991150)
[»] chr5 (3 HSPs)
chr5 (186-242)||(32239704-32239760)
chr5 (84-152)||(3168581-3168649)
chr5 (70-119)||(9724723-9724772)
[»] chr4 (2 HSPs)
chr4 (84-158)||(46639046-46639120)
chr4 (70-119)||(30821779-30821828)
[»] chr2 (2 HSPs)
chr2 (84-158)||(28400606-28400680)
chr2 (73-113)||(2207867-2207907)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 25891217 - 25890961
Alignment:
Q  17 tgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtg 116  Q
    ||||||||||||||||| ||||||||| ||||||||||| ||||||||  |||||  |||||||||||||||||||||| ||||||||||| ||||| ||    
T  25891217 tgtattatatgctcacaactcaggaggtaccgcaggttactcaggttgccgacctaatttggcataatcaggttcctctaaaggtgtcaatctttgcatg 25891118  T
Q  117 gcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccgattctttgtgtatttcggggtgcggccaggtg 216  Q
    |||||| |||||||||||  ||||||||||||||||  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||    
T  25891117 gcgactgctccgtgatcgcctacctactaaatctaatttggcatcacgtggtatacttaaagtggccgattctttgtgtatttcggggtgtggccaggtg 25891018  T
Q  217 gaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||||||    
T  25891017 gaggatgctcgtcatttgtttctctcttgttcttgctttggggagctgtggtctctg 25890961  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Original strand, 18309115 - 18309163
Alignment:
Q  225 tagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  18309115 tagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 18309163  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 37718938 - 37718866
Alignment:
Q  77 ggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatc 149  Q
    ||||||| ||||||||  | ||||||||||||||||| ||||| || ||||||||||| |||||||| |||||    
T  37718938 ggcataaacaggttcccttaaaggtgtcaatttttgcttggcggctgctccgtgatcgcttacctaccaaatc 37718866  T

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Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 17506963 - 17507150
Alignment:
Q  86 aggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccga 185  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17506963 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17507062  T
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17507063 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17507150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 17546251 - 17546064
Alignment:
Q  86 aggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccga 185  Q
    |||||||||| ||||||||||| |||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  17546251 aggttcctctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccga 17546152  T
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17546151 ttcttggtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctg 17546064  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 255
Target Start/End: Complemental strand, 15645311 - 15645130
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattct 173  Q
    |||||||||| ||| |||| || ||||||||| | ||||| ||||| || |||||||||    | ||||||||||||||| ||||||||||||||||  |    
T  15645311 tttggcataaacagattccactaaaggtgtcagtctttgcttggcggctgctccgtgattaccttcctactaaatctaacttggcatcacgtggtataat 15645212  T
Q  174 taatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 255  Q
    |||||||  || |||| ||||| |||||||||| ||||||||||||||||||  |||||||||| |||| ||||||||||||    
T  15645211 taatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcatcatttgtttttctcttgtccttgcttt 15645130  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 17504533 - 17504619
Alignment:
Q  4 tctgctcgttcactgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggtt 90  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||  || ||  |||||||||||||||||    
T  17504533 tctgttcgttctgtgtattatatgctcacatctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17504619  T

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Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17548681 - 17548595
Alignment:
Q  4 tctgctcgttcactgtattatatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggtt 90  Q
    |||| ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||||||  || ||  |||||||||||||||||    
T  17548681 tctgttcgttctgtgtattatatgctcacatctcaggaggtaccgcaggttactcaggttgacgatctaatttggcataatcaggtt 17548595  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 551599 - 551674
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatc 149  Q
    |||||||||| ||||||||| | ||||||||||||||||| ||||| ||  |||||||||| || ||||| |||||    
T  551599 tttggcataaacaggttcctttaaaggtgtcaatttttgcttggcggctgatccgtgatcgcttgcctaccaaatc 551674  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 8771518 - 8771450
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| ||||    
T  8771518 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaa 8771450  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 39694566 - 39694526
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgc 113  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  39694566 gtttggcacaaacaggttcctcttaaggtgtctatttttgc 39694526  T

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Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 74 - 255
Target Start/End: Original strand, 7956698 - 7956879
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtattct 173  Q
    |||||||||| |||||||| || ||||||||| | ||||| |||||  | |||||||||||  | ||||||||||||||| ||||||| ||||||||  |    
T  7956698 tttggcataaacaggttcccctaaaggtgtcagtctttgcttggcggttgctccgtgatcgccttcctactaaatctaacttggcatctcgtggtataat 7956797  T
Q  174 taatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 255  Q
    |||||||  || |||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7956798 taatgtggacgcttctatgtgtgtttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcatgtccttgcttt 7956879  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 15602419 - 15602321
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggcatcacgtggtatt 171  Q
    ||||||||||| || |||||  |||||||||| |||||||| |||||  | || ||||||||||| || ||||| |||||| | ||| | |||||||||    
T  15602419 gtttggcataaccatgttccgattaaggtgtctatttttgcttggcggttgcttcgtgatcgatttcccactaagtctaacttagcaacccgtggtatt 15602321  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 14528468 - 14528424
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgcgtgg 117  Q
    ||||||||||||||||||||| | ||||| ||| |||||||||||    
T  14528468 gtttggcataatcaggttcctttgaaggtctcagtttttgcgtgg 14528424  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 26513822 - 26513774
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggc 118  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| ||||    
T  26513822 cttgtttggcataagcaggttcctctaaaggtttccatttttgcttggc 26513774  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 236
Target Start/End: Complemental strand, 14854046 - 14853834
Alignment:
Q  24 tatgctcacatctcaggaggcaccgcaggttaatcaggttgtggaccttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgacta 123  Q
    |||||||||| ||||||||| ||||||||||| ||||| ||| ||  |  |||||||||| |||||||  || ||||||||| | ||||| ||||| ||     
T  14854046 tatgctcacaactcaggaggtaccgcaggttactcaggatgtcgatttgatttggcataaacaggttctcctaaaggtgtcagtctttgcttggcggctg 14853947  T
Q  124 ctccgtgatcgattacctactaaatctaacctggcatcacgtggtattcttaatgtgaccgattctttgtgtatttcggggtgcggccaggtggaggatg 223  Q
    |||||||||||    ||||||||||||||| ||||||||||||||||  ||||||||   | |||| ||||| |||||||||| || |||||||||||||    
T  14853946 ctccgtgatcgtcctcctactaaatctaacttggcatcacgtggtataattaatgtggatgcttctatgtgtgtttcggggtgtggtcaggtggaggatg 14853847  T
Q  224 ctagtcatttgtt 236  Q
    || ||||||||||    
T  14853846 ctcgtcatttgtt 14853834  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 45684260 - 45684186
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  45684260 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 45684186  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 17700334 - 17700285
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  17700334 cttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcg 17700285  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 53941417 - 53941368
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| ||||||||||| ||||| || |||||||| |||||    
T  53941417 cttgtttggcataagcaggttcctctgaaggtatccatttttgcatggcg 53941368  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 39585005 - 39584913
Alignment:
Q  181 accgattctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctctg 273  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  39585005 accgattctttgtgtattttggggtgtggccaggtggaggatgctcgtcatttgtttctctcgtgtccttgctttagggagttgtggtctctg 39584913  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 9991150 - 9991072
Alignment:
Q  74 tttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| |||||||| ||||||||| | |||||||| ||||| || || |||||||   | ||||||||||||||    
T  9991150 tttggcataaacaggttccgcttaaggtgcctatttttgcttggcggctgcttcgtgatcaccttcctactaaatctaa 9991072  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 32239760 - 32239704
Alignment:
Q  186 ttctttgtgtatttcggggtgcggccaggtggaggatgctagtcatttgtttctctc 242  Q
    |||| ||||| |||||||||| || ||||||||||||||| ||||||||||||||||    
T  32239760 ttctatgtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtttctctc 32239704  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 3168581 - 3168649
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaa 152  Q
    |||||||||| | ||||| ||||||||||||||||| ||  |||| |||||||||||||| ||| ||||    
T  3168581 tcaggttcctttgaaggtttcaatttttgcgtggcggcttatccgagatcgattacctacgaaagctaa 3168649  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 9724723 - 9724772
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| || ||||| |||||||| ||||||||||| |||||    
T  9724723 cttgtttggcataaacatgttccacttaaggtctcaatttttgcttggcg 9724772  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 46639046 - 46639120
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  46639046 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 46639120  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 30821779 - 30821828
Alignment:
Q  70 cttgtttggcataatcaggttcctcttaaggtgtcaatttttgcgtggcg 119  Q
    |||||||||||||| |||||||| |||||||| ||||| ||||| |||||    
T  30821779 cttgtttggcataaacaggttccacttaaggtctcaatatttgcttggcg 30821828  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 28400606 - 28400680
Alignment:
Q  84 tcaggttcctcttaaggtgtcaatttttgcgtggcgactactccgtgatcgattacctactaaatctaacctggc 158  Q
    |||||||||| | ||||| ||| ||||||||||||| ||  |||| |||||||||||||| ||| |||| |||||    
T  28400606 tcaggttcctttgaaggtttcagtttttgcgtggcggcttatccgggatcgattacctacgaaagctaatctggc 28400680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 2207867 - 2207907
Alignment:
Q  73 gtttggcataatcaggttcctcttaaggtgtcaatttttgc 113  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  2207867 gtttggcacaaacaggttcctcttaaggtgtctatttttgc 2207907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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