View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_13 (Length: 280)
Name: NF12821_low_13
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 268
Target Start/End: Original strand, 25239968 - 25240231
Alignment:
| Q |
7 |
gaagcagagaacaagaataagtgttagaagag--agacaaacatagacaagaaggacacatagacaaatcttattaagatttgattctctttgaatttaa |
104 |
Q |
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| T |
25239968 |
gaagcagagaacaagaataaatgttagaagagagagacaaacatagacaagaaggacacatagacaaatcttattaagatttgattctctttgaatttaa |
25240067 |
T |
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| Q |
105 |
ttacttaaactaccttaaagccatctcatgaatgaaatgaaaaggtgttagctatgtagtgtaagttcaagattgatattgtctttgagaggtaaaagct |
204 |
Q |
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| T |
25240068 |
ttacttaaactaccttaaagccatctcatgaatgaaatgaaaaggtgttagctatatagtgtaagttcaagattgatattgtctttgagaggtaaaagct |
25240167 |
T |
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| Q |
205 |
agttacatattagttagatcagttaggagttagttagtctaattgactatataagttgtgatgt |
268 |
Q |
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| T |
25240168 |
agttacatattagttagatcagttaggagttagttagtctaattgactatataagtcgtgatgt |
25240231 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 259
Target Start/End: Original strand, 46992427 - 46992498
Alignment:
| Q |
188 |
tttgagaggtaaaagctagttacatattagttagatcagttaggagttagttagtctaattgactatataag |
259 |
Q |
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| T |
46992427 |
tttgagatgtaaaagttaattacatattagttagattgattaggagttagttggtctaatcgactatataag |
46992498 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 32625582 - 32625521
Alignment:
| Q |
197 |
taaaagctagttacatattagttagatcagttaggagttagttagtctaattgactatataa |
258 |
Q |
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| T |
32625582 |
taaaagttaattacatattagttacattagttaggaattagtttgtctaatttactatataa |
32625521 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 38503909 - 38503848
Alignment:
| Q |
196 |
gtaaaagctagttacatattagttagatcagttaggagttagttagtctaattgactatata |
257 |
Q |
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||||||||||||||||| |||||| || |||||||||| ||| ||| |||||| ||||||| |
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| T |
38503909 |
gtaaaagctagttacatgttagtttaattagttaggagtaagtcagtttaattggctatata |
38503848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 43182189 - 43182242
Alignment:
| Q |
204 |
tagttacatattagttagatcagttaggagttagttagtctaattgactatata |
257 |
Q |
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|||||||||||||||||||| |||||| |||||||| || ||||| ||| |||| |
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| T |
43182189 |
tagttacatattagttagattagttagaagttagttggtttaattaactgtata |
43182242 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Original strand, 8288555 - 8288599
Alignment:
| Q |
215 |
tagttagatcagttaggagttagttagtctaattgactatataag |
259 |
Q |
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|||||| || ||||||||||||||| ||||||||| ||||||||| |
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| T |
8288555 |
tagttacattagttaggagttagttggtctaattggctatataag |
8288599 |
T |
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