View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_15 (Length: 265)
Name: NF12821_low_15
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 247
Target Start/End: Original strand, 48655511 - 48655744
Alignment:
| Q |
13 |
cagacgtagacatttatccaacaaactatcaaatcattgaagattcactccaaaaacatatcaaattatttattactttatgcttctactaaaataacta |
112 |
Q |
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| T |
48655511 |
cagacgtagacatttatccaacaaattatcaaatcattgaagattcactccaaaaacatatcaaattatttattactttatgcttctaataaaataacta |
48655610 |
T |
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| Q |
113 |
ctacattnnnnnnnnctactacatgagctctccacctaataagcagagtactttctctttttggaattttcatacctaaatttattaacccctaggatag |
212 |
Q |
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| T |
48655611 |
ctacattaaaaaaa-ctactacatgagctctccacctaataagcagagtactttctctttttggaattttcatacctaaatttattatcccctaggatag |
48655709 |
T |
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| Q |
213 |
catttgggtgacattgtttccgctatgggtagttt |
247 |
Q |
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| T |
48655710 |
cacttgggtgaaattgtttcccctatgggtagttt |
48655744 |
T |
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