View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_2 (Length: 594)
Name: NF12821_low_2
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 18 - 560
Target Start/End: Original strand, 11960002 - 11960545
Alignment:
| Q |
18 |
gaaagtgaggaaggtaatgaagaatcatgtgtaaatgatgacgaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagaggaga |
117 |
Q |
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| T |
11960002 |
gaaagtgaggaaggtaatgaagaatcatgtgtaaatgatgacgaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagaggaga |
11960101 |
T |
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| Q |
118 |
gttcttgtggttgcatggaggtggtgcgaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataatgatgaggaatcact |
217 |
Q |
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| T |
11960102 |
gttcttgtggttgcatggaggtggtgcaaggtggatttcatgatgttgtggaagagggaaagaaagggagaagagattgtgataatgatgaggaatcact |
11960201 |
T |
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| Q |
218 |
tgttctctgtaaaattataatgttatattttgaagcttctcaaaaagacaataataaaccaatataatttggtgcaaaaggaaaattgattgtgtttgtt |
317 |
Q |
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| T |
11960202 |
tgttctctgtaaaattataatgttatattttgaagcttctcaaaaagacaataataaaccaatataatttggtgcaaaaggaaaattgtttgtgtttgtt |
11960301 |
T |
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| Q |
318 |
ggtgatgaaaaaacttggaagtgtattttgacaacaatgctggatttgtatgtgttttcccaagagttgtttgtggtttggcagcggtggtgtgtggcga |
417 |
Q |
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| T |
11960302 |
ggtgatgaaaaaacttggaagtgtattttgacaacaatgctggatttgtatgtgttttcccaagagttgtttgtggtttggcagcggtggtgtgtggcga |
11960401 |
T |
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| Q |
418 |
a-tagcagtggaaaaaatcttgctagtttcagggatagtcataaattcataatgatgttttggagaagattaaaggatgaagttggtggtgttaactttt |
516 |
Q |
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| T |
11960402 |
agtggcagtggaaaaaatcttgctagtttcagggatagtcataaattcatgatgatgttttggagaagattaaaggatgaagttggtggtgttaactttt |
11960501 |
T |
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| Q |
517 |
tagtttaattttaaatttccaatttttacatccctatcaaactg |
560 |
Q |
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| T |
11960502 |
tagtttaattttaaatttccaatttttacatccctatcaaactg |
11960545 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 1178836 - 1178893
Alignment:
| Q |
60 |
gaagatgaaagttgaagggtgtgaaaaaatccagaaggttgttggcagagagaggaga |
117 |
Q |
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| T |
1178836 |
gaagatgaaggttgaaggaagtgaaaaaatcaagaagcttgttgtcagagagaggaga |
1178893 |
T |
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