View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12821_low_20 (Length: 222)

Name: NF12821_low_20
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12821_low_20
NF12821_low_20
[»] chr3 (22 HSPs)
chr3 (1-219)||(11782403-11782621)
chr3 (1-222)||(10516912-10517133)
chr3 (11-222)||(10526783-10526994)
chr3 (9-222)||(10500001-10500214)
chr3 (12-222)||(10541398-10541608)
chr3 (20-127)||(8860805-8860912)
chr3 (20-144)||(10580103-10580227)
chr3 (20-143)||(11149297-11149420)
chr3 (20-144)||(10376288-10376412)
chr3 (20-146)||(10088290-10088416)
chr3 (29-146)||(10195173-10195290)
chr3 (20-127)||(10888825-10888932)
chr3 (20-143)||(11131469-11131592)
chr3 (44-146)||(10434511-10434613)
chr3 (19-143)||(10364240-10364364)
chr3 (20-123)||(11160460-11160563)
chr3 (23-126)||(11768754-11768857)
chr3 (20-76)||(10085678-10085734)
chr3 (20-76)||(10192598-10192654)
chr3 (19-155)||(13332395-13332531)
chr3 (20-76)||(9838431-9838487)
chr3 (20-76)||(9849309-9849365)
[»] chr4 (1 HSPs)
chr4 (4-174)||(17853347-17853517)
[»] chr6 (1 HSPs)
chr6 (20-128)||(31680182-31680290)
[»] chr2 (1 HSPs)
chr2 (20-144)||(26906399-26906523)
[»] scaffold0083 (1 HSPs)
scaffold0083 (20-146)||(50248-50374)
[»] chr8 (2 HSPs)
chr8 (20-77)||(44958152-44958209)
chr8 (19-74)||(11484589-11484644)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 11782403 - 11782621
Alignment:
Q  1 atggtagtttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgc 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11782403 atggtagcttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatctttgaactgtttctgc 11782502  T
Q  101 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactttgtgtcttttacgaaaccacgaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||    
T  11782503 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactctgccagttgtgagtaattgagctttgtgttttttacgaaaccacgaaact 11782602  T
Q  201 ctgatgaggtaagcttctc 219  Q
    |||||||||||||||||||    
T  11782603 ctgatgaggtaagcttctc 11782621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10517133 - 10516912
Alignment:
Q  1 atggtagtttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgc 100  Q
    ||||||| ||||||| || ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10517133 atggtagcttattaaatctagcaaatcttcagaatcaaagattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgc 10517034  T
Q  101 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactttgtgtcttttacgaaaccacgaaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||| |||||||||||||||| ||||| ||||||||||||||    
T  10517033 tctgcatcaaccagcacagcttgaagagcaaacagtgttgttttcaactcagccagttgtgaataattgaactttgtgttttttatgaaaccacgaaact 10516934  T
Q  201 ctgatgaggtaagcttctctgc 222  Q
    ||||||||||||||||||||||    
T  10516933 ctgatgaggtaagcttctctgc 10516912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 10526994 - 10526783
Alignment:
Q  11 attaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  10526994 attaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatgaagccattgtttgacaggaaggtcagtgaactgtttctgctctgcatcaa 10526895  T
Q  111 ccagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactttgtgtcttttacgaaaccacgaaactctgatgaggt 210  Q
    |||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||| | |||| | | | |||||||||||||||||||||| |    
T  10526894 ccagcacagcttgaagagcaaacaatgttgttttcaattctgccagcggtgagtaattgaacctggtgtttctgatgaaaccacgaaactctgatgagct 10526795  T
Q  211 aagcttctctgc 222  Q
     ||||| |||||    
T  10526794 tagcttgtctgc 10526783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 10500214 - 10500001
Alignment:
Q  9 ttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatc 108  Q
    |||||||||| |||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  10500214 ttattaagtcgagcaaatcttcagcatcaaagattgtgtctttcaagtcatcaagccattgtttgacaggaagatcagtgaattgtttctgctctgcatc 10500115  T
Q  109 aaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactttgtgtcttttacgaaaccacgaaactctgatgag 208  Q
    ||| || ||||||||||||||||| |||||||||||||| ||||||| | | ||||||||||||||||||| ||||| |||| |||||||||||||||||    
T  10500114 aactagaacagcttgaagagcaaaaagtgttgttttcaaatctgccaatagcgagtaattgaactttgtgttttttatgaaaacacgaaactctgatgag 10500015  T
Q  209 gtaagcttctctgc 222  Q
     | |||||||||||    
T  10500014 cttagcttctctgc 10500001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 10541608 - 10541398
Alignment:
Q  12 ttaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaac 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  10541608 ttaagtcaagcaaatcttcagcatcaaagattgcatctttcaagtcatcaagccattgcttgacaggaaggtcaatgaactgtttctgctctgcatcaac 10541509  T
Q  112 cagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactttgtgtcttttacgaaaccacgaaactctgatgaggta 211  Q
    |||||||| |||||||||||||| ||||||||||||||| |||||  |||||||||||||| | |||| | | | |||||||||||||||||||||| |     
T  10541508 cagcacagattgaagagcaaacaatgttgttttcaattcggccagcagtgagtaattgaacctggtgtttctgatgaaaccacgaaactctgatgagctt 10541409  T
Q  212 agcttctctgc 222  Q
    ||||| |||||    
T  10541408 agcttgtctgc 10541398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 8860912 - 8860805
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| ||||||||||| |  |||||||||||||||||||||||||||||||||| | |||  |||| ||| |||| |||||||||| |||||||||    
T  8860912 agcaaatcctcagcatcaaagagagcatctttcaagtcatcaagccattgtttgacagcacgattgttgatctgcttctcctctgcatcatccagcacag 8860813  T
Q  120 cttgaaga 127  Q
    ||||||||    
T  8860812 cttgaaga 8860805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 10580227 - 10580103
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    ||||| || ||||||||||  || |||||||||||||||||||||||| ||||||||| | ||| ||||| ||| |||| |||||||||| ||||||||     
T  10580227 agcaagtcctcagcatcaatgatagcatctttcaagtcatcaagccatagtttgacagcaggattattgatctgcttctcctctgcatcatccagcacaa 10580128  T
Q  120 cttgaagagcaaacagtgttgtttt 144  Q
    |||||||||  | ||||||||||||    
T  10580127 cttgaagagtgagcagtgttgtttt 10580103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 11149297 - 11149420
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| || |||||||| || |||||||||||||||||||||||||||||||||| | |||  |||| ||| ||||  || |||||| |||||||||    
T  11149297 agcaaatcctcggcatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgcttctcatcagcatcatccagcacag 11149396  T
Q  120 cttgaagagcaaacagtgttgttt 143  Q
    |||||||| | | |||||||||||    
T  11149397 cttgaagaaccagcagtgttgttt 11149420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 10376288 - 10376412
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    ||||| || ||||||||||| || |||||||||||||||||||||||||| ||||||| | |||   ||| ||| |||| |||||||||| ||||||||     
T  10376288 agcaagtcctcagcatcaaagatagcatctttcaagtcatcaagccattgcttgacagaaggattgatgatctgcttctcctctgcatcatccagcacaa 10376387  T
Q  120 cttgaagagcaaacagtgttgtttt 144  Q
    |||||||||  | ||||||||||||    
T  10376388 cttgaagagtgagcagtgttgtttt 10376412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 10088416 - 10088290
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    ||||| || ||||||||||| |  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| ||||||||     
T  10088416 agcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaa 10088317  T
Q  120 cttgaagagcaaacagtgttgttttca 146  Q
    |||||||||  | ||||||||||||||    
T  10088316 cttgaagagtgagcagtgttgttttca 10088290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 146
Target Start/End: Complemental strand, 10195290 - 10195173
Alignment:
Q  29 tcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagcttgaagag 128  Q
    ||||||||||| |  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| |||||||| |||||||||    
T  10195290 tcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctccgcatcatccagcacaacttgaagag 10195191  T
Q  129 caaacagtgttgttttca 146  Q
      | ||||||||||||||    
T  10195190 tgagcagtgttgttttca 10195173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 10888932 - 10888825
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| || |||||||| |  |||||||||||||||||||||||||||||||||| | | |  |||| ||| |||| ||| |||||| |||||||||    
T  10888932 agcaaatcctccgcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctgcttctcctcagcatcatccagcacag 10888833  T
Q  120 cttgaaga 127  Q
    ||||||||    
T  10888832 cttgaaga 10888825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 11131469 - 11131592
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| || |||||||| || ||||||||||||||||||| ||||| |||||||| | | |  |||| ||| |||| ||| |||||| |||||||||    
T  11131469 agcaaatcctccgcatcaaagatagcatctttcaagtcatcaacccattttttgacagcacggttgttgatctgcttctcctcagcatcatccagcacag 11131568  T
Q  120 cttgaagagcaaacagtgttgttt 143  Q
    |||||||| | | |||||||||||    
T  11131569 cttgaagaaccagcagtgttgttt 11131592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 44 - 146
Target Start/End: Original strand, 10434511 - 10434613
Alignment:
Q  44 gcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagcttgaagagcaaacagtgttgttt 143  Q
    |||||||||||||||||||||||||||||||||| | | |  |||| ||| |||| |||||||||| |||||||| |||||||||  |  ||||||||||    
T  10434511 gcatctttcaagtcatcaagccattgtttgacagcaggtttgttgatctgcttctcctctgcatcatccagcacaacttgaagagtgagaagtgttgttt 10434610  T
Q  144 tca 146  Q
    |||    
T  10434611 tca 10434613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 10364240 - 10364364
Alignment:
Q  19 aagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcaca 118  Q
    ||||||||| || |||||||| |  |||||||||||| ||||||||||||||||||||| | |||  |||| ||| ||||  ||||| ||| ||||||||    
T  10364240 aagcaaatcctcggcatcaaagacagcatctttcaagccatcaagccattgtttgacagcaggattgttgatctgcttctcttctgcgtcatccagcaca 10364339  T
Q  119 gcttgaagagcaaacagtgttgttt 143  Q
     |||||||||  | |||||||||||    
T  10364340 acttgaagagtgagcagtgttgttt 10364364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 11160460 - 11160563
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| || |||||||| |  |||||||||||||||||||||||||||||||||| | | |  |||| ||  |||| |||||||||| |||||||||    
T  11160460 agcaaatcctcggcatcaaagacagcatctttcaagtcatcaagccattgtttgacagcacggttgttgatctacttctcctctgcatcatccagcacag 11160559  T
Q  120 cttg 123  Q
    ||||    
T  11160560 cttg 11160563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 11768857 - 11768754
Alignment:
Q  23 aaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacagctt 122  Q
    ||||| ||||||||||| || || ||||||||||||||||||||||||||||||| |||||  || | ||| |||| ||| |||||| |||| ||||| |    
T  11768857 aaatcctcagcatcaaagatagcgtctttcaagtcatcaagccattgtttgacagcaagattgttcatctgcttctcctccgcatcatccagtacagcct 11768758  T
Q  123 gaag 126  Q
    ||||    
T  11768757 gaag 11768754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 10085734 - 10085678
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgaca 76  Q
    |||||||||||||||||||| |   |||||||||||| ||||||||| |||||||||    
T  10085734 agcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 10192654 - 10192598
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgaca 76  Q
    |||||||||||||||||||| |   |||||||||||| ||||||||| |||||||||    
T  10192654 agcaaatcttcagcatcaaagaaaacatctttcaagttatcaagccactgtttgaca 10192598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 13332531 - 13332395
Alignment:
Q  19 aagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcaca 118  Q
    ||||||||| ||||||||| | |||||||||||||  | ||| | |||||||||||||| |   |   |||  || ||||| ||||||||| |||||||     
T  13332531 aagcaaatcctcagcatcatagattgcatctttcagctgatccaaccattgtttgacagcagtgttggtgatttgcttctgttctgcatcatccagcacc 13332432  T
Q  119 gcttgaagagcaaacagtgttgttttcaattctgcca 155  Q
    || |||||||| | ||||||||||| ||| |||||||    
T  13332431 gcctgaagagcgagcagtgttgtttccaactctgcca 13332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9838487 - 9838431
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgaca 76  Q
    |||||||| ||||||||||| |   |||||||||||| ||||||||| |||||||||    
T  9838487 agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca 9838431  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9849365 - 9849309
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgaca 76  Q
    |||||||| ||||||||||| |   |||||||||||| ||||||||| |||||||||    
T  9849365 agcaaatcctcagcatcaaagacaacatctttcaagttatcaagccactgtttgaca 9849309  T

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Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 4 - 174
Target Start/End: Original strand, 17853347 - 17853517
Alignment:
Q  4 gtagtttattaagtcaagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctct 103  Q
    |||||| ||||| || |||| |||||| |  ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||    
T  17853347 gtagttgattaaatcgagcagatcttccgtgtcaaagatagcgtctttcaaatcatcaagccattgtttgacaggaagatcgttgaattgtttctgttct 17853446  T
Q  104 gcatcaaccagcacagcttgaagagcaaacagtgttgttttcaattctgccagtcgtgagtaattgaactt 174  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||  |||| ||||||||||||||||    
T  17853447 gcatcaaccagcacagcttgaagagaaaacagtgtcgttttcaactctttcagttgtgagtaattgaactt 17853517  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 31680182 - 31680290
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||  |||| ||| |||| ||| |||||| | || ||||    
T  31680182 agcaaatcctcagcatcatatattgcatctttcaactcatcaagccattgtttgacaggaagattgttgatctgcttcttctcagcatcatcaagaacag 31680281  T
Q  120 cttgaagag 128  Q
    | |||||||    
T  31680282 catgaagag 31680290  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 26906523 - 26906399
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    ||||| || ||| ||||||| || |||||||||||||||||||||||||||||||||| | |||  |||| |||||||| |||||||||| ||||||||     
T  26906523 agcaagtcctcaacatcaaagatagcatctttcaagtcatcaagccattgtttgacagcaggattgttgatctgtttctcctctgcatcatccagcacaa 26906424  T
Q  120 cttgaagagcaaacagtgttgtttt 144  Q
    | || ||||  | ||||||||||||    
T  26906423 cctgcagagtgagcagtgttgtttt 26906399  T

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Target: scaffold0083 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 50248 - 50374
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacaggaagatcattgaactgtttctgctctgcatcaaccagcacag 119  Q
    ||||| || ||||||||||| |  |||||||||||||||||||||||| ||||||||| | |||  |||| ||| |||| ||| |||||| ||||||||     
T  50248 agcaagtcctcagcatcaaagacagcatctttcaagtcatcaagccatagtttgacagcaggattgttgatctgcttctcctcagcatcatccagcacaa 50347  T
Q  120 cttgaagagcaaacagtgttgttttca 146  Q
    |||||||||  |  |||||||||||||    
T  50348 cttgaagagtgagaagtgttgttttca 50374  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 44958152 - 44958209
Alignment:
Q  20 agcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttgacag 77  Q
    |||||||| || ||||||||||||| || |||||||||||||||||||||||||||||    
T  44958152 agcaaatcctcggcatcaaatattgtatttttcaagtcatcaagccattgtttgacag 44958209  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 11484644 - 11484589
Alignment:
Q  19 aagcaaatcttcagcatcaaatattgcatctttcaagtcatcaagccattgtttga 74  Q
    ||||||||| ||||||||||| ||||||||||||||   |||||||||||||||||    
T  11484644 aagcaaatcctcagcatcaaagattgcatctttcaaccgatcaagccattgtttga 11484589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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