View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_21 (Length: 207)
Name: NF12821_low_21
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 28448023 - 28447982
Alignment:
| Q |
15 |
cagagagaggaacaccgaagccaaggccagccaaagcccaaa |
56 |
Q |
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| T |
28448023 |
cagagagaggaacaccgaagccaaggccagccaaagcccaaa |
28447982 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18690645 - 18690607
Alignment:
| Q |
15 |
cagagagaggaacaccgaagccaaggccagccaaagccc |
53 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |
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| T |
18690645 |
cagagagaggaacaccgaagccaaggccaaccaaagccc |
18690607 |
T |
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