View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_3 (Length: 564)
Name: NF12821_low_3
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 14 - 543
Target Start/End: Complemental strand, 36051623 - 36051091
Alignment:
| Q |
14 |
atggacatcaggtttgttaagttttctgcggtacctgatgacaatttcgtgggtggtgagtatttgtgtaaagtaacatgagcatataatggatcgatac |
113 |
Q |
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| T |
36051623 |
atggagatcaggtttgttaagttttctgcggtacctgatgacaatttcatgggtggtgagtatttgtgtaaagtaacaggagcatataatggatcgatac |
36051524 |
T |
|
| Q |
114 |
ctgcagcaacacttccatcccgcggtttcggcggcggcaacggtggagccaaggcagtgtctagcggttttggagattgtggaccgagagcaggattgct |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051523 |
ctgcagcaacacttccatccggcggtttcggcggcggcaacggtggagccaaggcagtgtctagcggttttggagattgtggaccgagagcaggattgct |
36051424 |
T |
|
| Q |
214 |
aaatttcttgtctcccgtcatgacgatgacgctcctctgttgtacgccatcaaaggaatctgcaattttcagttgaacaacctgaacttccaattttagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
36051423 |
aaatttcttgtctcccgtcatgacgatgacgctcctctgttgtacgccatcaatggaatctgcaatttccagttgaacaacctgaacttccgattttagt |
36051324 |
T |
|
| Q |
314 |
ggggaatccagatcctgttcacccgtaatgaaagctatggaatcaacataatcgtgagtgatggagggcttctcaacaagctttgagcatggtggaagat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051323 |
ggggaatccagatcctgttcacccgtaatgaaagctatggaatcaacataatcgtgagtgatggagggcttctcaacaagctttgagcatggtggaagat |
36051224 |
T |
|
| Q |
414 |
cttgattgtgttcacctggtatgtctagtacgagatcaacaacacaatcggaaactcgggaag---gcttcacctccaactttgaggattcacatgtttc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
36051223 |
cttgattgtgttcacctggtatgtctagtacgagatcaacaacacaatcggaaactcgggaaggctgcttcacctccaactttgaggattcacatgcttc |
36051124 |
T |
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| Q |
511 |
ctccgtttcttcatctaacacaggcaagagatg |
543 |
Q |
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| T |
36051123 |
ctccgtttcttcatctaacacaggcaagagatg |
36051091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 30453739 - 30453622
Alignment:
| Q |
33 |
agttttctgcggtacctgatgacaatttcgtgggtggtgagtatttgtgtaaagtaacatgagcatataatggatcgatacctgcagcaacacttccatc |
132 |
Q |
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|||||||||||||||| || ||||| ||||||| | ||| ||||||||||||||||||| |||| |||| |||||||| ||||||||||| ||| |
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| T |
30453739 |
agttttctgcggtaccaaataacaatacagtgggtgtcgggtaactgtgtaaagtaacatgagcgcataaaggattgatacctgtagcaacacttcgatc |
30453640 |
T |
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| Q |
133 |
ccgcggtttcggcggcgg |
150 |
Q |
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| T |
30453639 |
tggtggtttcggcggcgg |
30453622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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