View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12821_low_4 (Length: 526)
Name: NF12821_low_4
Description: NF12821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12821_low_4 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 20019169 - 20018645
Alignment:
| Q |
1 |
tgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataatgtgctctgcacttgcaatataaaattttcggcaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20019169 |
tgacagtaacaaagtatgtttatcgattagtttttatataaatatttggtttatgaatataatgtgctctgcagttgcaatataaaattttcggcaaaaa |
20019070 |
T |
|
| Q |
101 |
agtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatatttcttttg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20019069 |
agtctaattaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatatttcttttg |
20018970 |
T |
|
| Q |
201 |
ctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaacacatgaactgcattttatgtggctaacag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20018969 |
ctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaacacatgaactgcattttatgtggctaacag |
20018870 |
T |
|
| Q |
301 |
tcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatgatgttgatactcaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20018869 |
tcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccttgatgttgatactcaa |
20018770 |
T |
|
| Q |
401 |
ctaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaagnnnnnnnnnngtggattagctaaactagaggaacaatccgtctttt |
500 |
Q |
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| T |
20018769 |
ctaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag-tttttttttgtggattagctaaactagaggaacaatccgtctttt |
20018671 |
T |
|
| Q |
501 |
attaagataaattgtaaaatcccttt |
526 |
Q |
| |
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|||||||||| ||||||||||||||| |
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| T |
20018670 |
attaagataacttgtaaaatcccttt |
20018645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 90 - 356
Target Start/End: Complemental strand, 20000280 - 20000010
Alignment:
| Q |
90 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatgga |
189 |
Q |
| |
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|||||||||||||||||| || ||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||| | |||||| |
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| T |
20000280 |
ttcggcaaaaaagtctaattacatcctttctgtgacaggattctcctttaagtaagaagcagaaatctaacataatttctgaggatggtaagattatgga |
20000181 |
T |
|
| Q |
190 |
tatt--tcttttg-ctatcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaatgactagtaccaaaca-catgaactgcatt |
285 |
Q |
| |
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| || ||||||| ||||| |||||||||| ||||||| |||| |||| |||||||||||||| |||||||||||||||||||| |||| ||||| | |
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| T |
20000180 |
tttttctcttttgactatcatataataaaaattcatgttttattttgatcaataatttgaatgttcagaatgactagtaccaaacaccatggactgccgt |
20000081 |
T |
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| Q |
286 |
ttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttgggga |
356 |
Q |
| |
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| |||||||||||||||||||||| || || ||||||||||||||||||| ||||| |||||||| |||| |
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| T |
20000080 |
tcatgtggctaacagtcttgcatcttgtttctttgtagaaaatccatctgggctggctcagaatttaggga |
20000010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 91 - 454
Target Start/End: Complemental strand, 20029069 - 20028704
Alignment:
| Q |
91 |
tcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggat |
190 |
Q |
| |
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|||| ||||| || ||| || ||||||| | |||||||| ||||||| ||| | |||||||| ||||||||| |||| || |||||||| | ||||||| |
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| T |
20029069 |
tcggaaaaaatgtttaattacatcctttctttggcaggactctccttcaagtatgaagcagagatctaacattattattggtgatggtaagattatggat |
20028970 |
T |
|
| Q |
191 |
atttcttttgct-atcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaa--tgactagtaccaaacacatgaactgcatttt |
287 |
Q |
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||||||||| | |||||||||||| | |||||| || | | || ||||||||||| ||| |||| |||||| ||| |||||||||||||| | || |
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| T |
20028969 |
ttttcttttgattatcttataataagaattcatgctttttttt-atctataatttgaaggttcagaaggtgactaatacaaaacacatgaactgaagttc |
20028871 |
T |
|
| Q |
288 |
atgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatga |
387 |
Q |
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|| || |||||| |||||| | || || ||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||||||||| ||| |
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| T |
20028870 |
atatgactaacaatcttgctccttgtttctttgtagaaaatccatctgggctggctcagaatttggtgacagtcgtcaaggaatctgacactgacattga |
20028771 |
T |
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| Q |
388 |
tgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag |
454 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||| |||| ||| |||||||||||| |
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| T |
20028770 |
tgttgatgctcaactaaaaaatatggtattataatgttttatgcattttggtagcataaatgaaaag |
20028704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 268 - 454
Target Start/End: Complemental strand, 20009453 - 20009267
Alignment:
| Q |
268 |
aaacacatgaactgcattttatgtggctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaag |
367 |
Q |
| |
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|||||||||||||||| || || ||||||||||||||||| | || || ||||||||||||||||||| |||| |||||||| ||||||| ||||||| |
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| T |
20009453 |
aaacacatgaactgcagttcatctggctaacagtcttgcaccttgtttctttgtagaaaatccatctgggatggctcagaatttagggacagtcgtcaag |
20009354 |
T |
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| Q |
368 |
gaatctgacactgaccatgatgttgatactcaactaaaaaatatggtattataaagttttatgcgttttcatagtataaatgaaaag |
454 |
Q |
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|||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||| |
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| T |
20009353 |
gaatctgacaatgacattgatgttgatgctcaactaaaaaatatggtattataaagttttatgtgctttcgtagcataaatgaaaag |
20009267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 20000346 - 20000285
Alignment:
| Q |
1 |
tgacagtaacaaagtatgtttatcgattattttttatataaatatttggtttatgaatataa |
62 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||| |
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| T |
20000346 |
tgacagtaacaaagtatgtttatcgattattttttacataaatatgtggttgatgaatataa |
20000285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 199
Target Start/End: Complemental strand, 20009618 - 20009500
Alignment:
| Q |
80 |
atataaaattttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggta |
179 |
Q |
| |
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||||||||||| || |||||| |||||| || ||||||| | | |||||||||||||||||| | |||| | | |||||||||||||| || ||||||| |
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| T |
20009618 |
atataaaattt-cgacaaaaatgtctaattacatcctttctttagcaggattctcctttaagtatgaagaaaagatctaacatgattattggtgatggta |
20009520 |
T |
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| Q |
180 |
aaaatatggatatttctttt |
199 |
Q |
| |
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| | ||| ||| |||||||| |
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| T |
20009519 |
agattatcgatttttctttt |
20009500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 20029223 - 20029185
Alignment:
| Q |
5 |
agtaacaaagtatgtttatcgattattttttatataaat |
43 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||| |
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| T |
20029223 |
agtaacaaagtatgtttatcgattaatttttatataaat |
20029185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 96 - 437
Target Start/End: Original strand, 12573376 - 12573715
Alignment:
| Q |
96 |
aaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaacatgattactgaggatggtaaaaatatggatatttc |
195 |
Q |
| |
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|||||||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||| ||| |||| |
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| T |
12573376 |
aaaaaagtctaattacatcctttctgtggcagaattctcctttaactaagaagcataaatctaacatgattactgcggatggtaa-------gatttttc |
12573468 |
T |
|
| Q |
196 |
ttttgct-atcttataataaaatttcatgtattatcatgatttataatttgaatgttaagaa--tgactagtaccaaacacatgaactgcattttatgtg |
292 |
Q |
| |
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||||| | ||||||| |||||| ||||| | |||| ||||| ||||||||||||||| |||| ||| | || ||||| ||||||||| || | ||||| |
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| T |
12573469 |
ttttgattatcttatgataaaaattcattttttattatgatctataatttgaatgttcagaaggtgaatggttccaaagacatgaactacagctcatgtg |
12573568 |
T |
|
| Q |
293 |
gctaacagtcttgcatcatggtttgttgtagaaaatccatctggactggcacagaatttggggacagccgtcaaggaatctgacactgaccatg---atg |
389 |
Q |
| |
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|||||||| ||||||| || || ||||||||||| ||||||| ||||| |||||||||||||||| | ||||||||||||| | ||| || ||| |
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| T |
12573569 |
actaacagttttgcatcttgtttccttgtagaaaattcatctggtctggctcagaatttggggacagtcatcaaggaatctgatgccgacattgttaatg |
12573668 |
T |
|
| Q |
390 |
ttgatactcaactaaaaaatatggtattataaagttttatgcgttttc |
437 |
Q |
| |
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| ||| ||||||| |||||||||||||| | || |||||||||||||| |
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| T |
12573669 |
tcgatgctcaacttaaaaatatggtattgt-aacttttatgcgttttc |
12573715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12573208 - 12573280
Alignment:
| Q |
1 |
tgacagtaacaaagtatgtttatcgatt-attttttatataaatatttggtttatgaatataatgtgctctgc |
72 |
Q |
| |
|
|||||||||||||||||||| |||| || |||||||||||||| || ||| | |||||| ||| ||| ||||| |
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| T |
12573208 |
tgacagtaacaaagtatgttgatcgtttaattttttatataaaaatgtgggtgatgaatgtaacgtgttctgc |
12573280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 160
Target Start/End: Original strand, 19000216 - 19000286
Alignment:
| Q |
90 |
ttcggcaaaaaagtctaagtaaatcctttttgtggcaggattctcctttaagcaagaagcagaaatctaac |
160 |
Q |
| |
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|||||||||||||||||| || ||| |||||||||||||||| ||||| ||| ||||| | ||||||||| |
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| T |
19000216 |
ttcggcaaaaaagtctaattatatcatttttgtggcaggattttccttcaagaaagaatctaaaatctaac |
19000286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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