View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12822_high_4 (Length: 436)

Name: NF12822_high_4
Description: NF12822
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12822_high_4
NF12822_high_4
[»] chr1 (17 HSPs)
chr1 (1-415)||(8314617-8315031)
chr1 (180-289)||(1609283-1609393)
chr1 (230-291)||(15853229-15853290)
chr1 (180-305)||(32519874-32520003)
chr1 (230-282)||(32830049-32830101)
chr1 (234-289)||(5965237-5965292)
chr1 (237-289)||(1345428-1345480)
chr1 (180-305)||(18414364-18414493)
chr1 (191-289)||(18525631-18525730)
chr1 (180-252)||(45541347-45541423)
chr1 (180-295)||(2027665-2027784)
chr1 (180-295)||(24779699-24779818)
chr1 (180-295)||(49008010-49008129)
chr1 (194-295)||(52838580-52838686)
chr1 (180-293)||(14500941-14501058)
chr1 (240-282)||(9089955-9089997)
chr1 (230-295)||(8110531-8110596)
[»] scaffold0204 (1 HSPs)
scaffold0204 (7-421)||(13565-13983)
[»] chr4 (9 HSPs)
chr4 (31-295)||(18375941-18376213)
chr4 (180-305)||(5948016-5948145)
chr4 (205-282)||(29688806-29688887)
chr4 (230-289)||(34851445-34851504)
chr4 (180-295)||(27020384-27020503)
chr4 (230-291)||(1206661-1206722)
chr4 (180-295)||(39295769-39295879)
chr4 (195-244)||(19585847-19585896)
chr4 (237-289)||(37010469-37010521)
[»] chr3 (10 HSPs)
chr3 (14-295)||(25899075-25899366)
chr3 (180-295)||(3336085-3336204)
chr3 (180-295)||(4062511-4062630)
chr3 (180-295)||(28414189-28414308)
chr3 (180-295)||(37969015-37969134)
chr3 (192-289)||(46028385-46028486)
chr3 (180-295)||(33951805-33951924)
chr3 (180-252)||(22402288-22402364)
chr3 (371-421)||(44030904-44030954)
chr3 (230-282)||(587183-587234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (180-289)||(20212-20325)
[»] chr7 (10 HSPs)
chr7 (193-295)||(5287571-5287675)
chr7 (180-295)||(6616869-6616988)
chr7 (180-305)||(34638615-34638744)
chr7 (180-305)||(42053455-42053584)
chr7 (180-293)||(21949870-21949987)
chr7 (196-246)||(34935346-34935396)
chr7 (180-289)||(37573345-37573458)
chr7 (180-282)||(21292398-21292504)
chr7 (242-295)||(24648444-24648497)
chr7 (194-226)||(33440227-33440259)
[»] chr5 (8 HSPs)
chr5 (180-288)||(29731023-29731135)
chr5 (180-305)||(16482326-16482455)
chr5 (191-289)||(6764159-6764258)
chr5 (187-295)||(39561038-39561150)
chr5 (180-295)||(16484785-16484904)
chr5 (200-294)||(16044565-16044663)
chr5 (199-282)||(17110308-17110395)
chr5 (180-295)||(40834880-40834999)
[»] chr8 (10 HSPs)
chr8 (191-295)||(15683530-15683639)
chr8 (190-306)||(1805547-1805667)
chr8 (180-305)||(18381480-18381609)
chr8 (195-246)||(36017352-36017403)
chr8 (191-274)||(11958745-11958832)
chr8 (187-288)||(3941590-3941694)
chr8 (180-220)||(6420826-6420866)
chr8 (180-220)||(12498836-12498876)
chr8 (230-289)||(8776964-8777022)
chr8 (305-419)||(15683381-15683493)
[»] chr2 (9 HSPs)
chr2 (198-289)||(30750672-30750764)
chr2 (310-416)||(4159983-4160088)
chr2 (190-291)||(12528286-12528391)
chr2 (180-295)||(40267652-40267771)
chr2 (230-291)||(27544919-27544979)
chr2 (180-220)||(4159831-4159871)
chr2 (195-246)||(3552387-3552438)
chr2 (180-220)||(9160430-9160470)
chr2 (230-282)||(9894022-9894073)
[»] chr6 (8 HSPs)
chr6 (180-289)||(9513284-9513397)
chr6 (230-289)||(720396-720455)
chr6 (233-289)||(5474241-5474297)
chr6 (180-305)||(18899020-18899149)
chr6 (180-220)||(15559584-15559624)
chr6 (230-295)||(24316744-24316808)
chr6 (366-418)||(15559368-15559420)
chr6 (30-156)||(22460490-22460620)
[»] scaffold0009 (1 HSPs)
scaffold0009 (180-305)||(194777-194906)
[»] scaffold0088 (2 HSPs)
scaffold0088 (180-295)||(1849-1968)
scaffold0088 (180-224)||(9308-9352)
[»] scaffold0256 (1 HSPs)
scaffold0256 (180-295)||(4161-4280)


Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 8315031 - 8314617
Alignment:
Q  1 atcgcatacgacggtttgtctctggttcactttctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactgatgatcgcagta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8315031 atcgcatacgacggtttgtctctggttcactttctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactgatgatcgcagta 8314932  T
Q  101 atggttggtgtgtgtggtttcactaatttccgtgctggcggtcgaagccactcccctatcaaacgtccgtggtttcgtagattgaaatgagactgtgtgg 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  8314931 atggttggtgtgtgtggtttcgctaatttccgtgctggcggtcgaagccactcccctatcaaatgtccgtggtttcgtagattgaaatgggactgtgtgg 8314832  T
Q  201 actcgaaagagtcgttaatgtttgctgctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattataggtccg 300  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||    
T  8314831 actcgaaagagtcgttaatgcttgttgctttgcagggagttgatggtacgtgatccgaattcgtgttgacgatcgtttcatttgccaaattataggctcg 8314732  T
Q  301 attggttcgtttgttagaattgattaaggttgaatattgtgtgttgttcttattgatgtattaccacccgttagggttgattcacatggtttaactaggt 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  8314731 attggttcgtttgttagaattgattagggttgaatattgtgtgttgttattattgatgcattaccacccgttagggttgattcacatggtttaactgggt 8314632  T
Q  401 caggttttatgtccc 415  Q
    ||||||||| |||||    
T  8314631 caggttttacgtccc 8314617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 1609283 - 1609393
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct-ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgttt 278  Q
    |||||| ||| |||||| || ||||||||||||||| |||| |||||||  ||| ||||||||||||| ||||| ||||| ||| |||||||||||| ||    
T  1609283 gattgacatgggactgtatgaactcgaaagagtcgtcaatgcttgctgccgttgtagggagttgatggcacgtgatccgatttcttgttgacgatcgatt 1609382  T
Q  279 catttgccaaa 289  Q
    |||| ||||||    
T  1609383 cattcgccaaa 1609393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 15853290 - 15853229
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaatt 291  Q
    ||||||||||||||||||||||| ||| | |||||||||||||||| |||||| ||||||||    
T  15853290 ttgcagggagttgatggtacgtgatccaatttcgtgttgacgatcggttcattcgccaaatt 15853229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 32519874 - 32520003
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  32519874 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 32519973  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  32519974 atcaattcgccaaattatagacccgattgg 32520003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 32830049 - 32830101
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  32830049 ttgcagggagttgatggtacgtgatccgatttcgtgttgacgatcggttcatt 32830101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 5965237 - 5965292
Alignment:
Q  234 agggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    ||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||||    
T  5965237 agggagttgatggtacgtgatccgatttcgtgttgacgatcggttcattcgccaaa 5965292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 1345480 - 1345428
Alignment:
Q  237 gagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||||||||||||| ||||| |||||||||||||||| |||||| ||||||    
T  1345480 gagttgatggtacgtgatccgatttcgtgttgacgatcgattcattcgccaaa 1345428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 18414493 - 18414364
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||| ||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  18414493 gattgacatgagactgtgtgaacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 18414394  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  18414393 atcaattcgccaaattatagacccgattgg 18414364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 18525631 - 18525730
Alignment:
Q  191 gactgtgtggactcgaaagagtcgttaatgtttgctgct-ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||| |||||||||||||||| | |||||||| |||  ||| ||||||||||||| ||||| || || ||| |||||||||||| || ||| ||||||    
T  18525631 gactgtatggactcgaaagagtcatcaatgtttgttgccgttgtagggagttgatggcacgtgatctgatttcatgttgacgatcgatttattcgccaaa 18525730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 45541423 - 45541347
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtg 252  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| |||     ||||||||||||||||| |||||    
T  45541423 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtg 45541347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 2027784 - 2027665
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||| |||||||||| |||||||||||||||| ||| |||     ||||||||||||||||| || || ||||| || ||| ||| |||||    
T  2027784 gattgacatgagagtgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacatgatccgattttgtgatgaagatcg 2027685  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  2027684 atcaattcgccaaattatag 2027665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 24779818 - 24779699
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||| ||||||| ||| |||     ||||||||||||||||  ||||| ||||| ||  |||||| |||||    
T  24779818 gattgacatgagactgtgtggacttgaaagagtagttaatgcttgttgccgttattgcagggagttgatgacacgtgatccgattttatgttgaagatcg 24779719  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  24779718 atcaattcgccaaattatag 24779699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 49008129 - 49008010
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||| ||||||||||| ||||| ||||| || ||| ||| |||||    
T  49008129 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcaaggagttgatggcacgtgatccgattttgtgatgaagatcg 49008030  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  49008029 atcaattcgccaaattatag 49008010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 295
Target Start/End: Original strand, 52838580 - 52838686
Alignment:
Q  194 tgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggag-ttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaa 288  Q
    ||||| |||| |||||||||||||||| ||| |||    |||||| || | ||||||||||||| ||||| ||||||||||||||||  ||||| |||||    
T  52838580 tgtgtagacttgaaagagtcgttaatgcttgttgcggtttttgcaaggtggttgatggtacgtgatccgatttcgtgttgacgatcgcatcattcgccaa 52838679  T
Q  289 attatag 295  Q
    | |||||    
T  52838680 agtatag 52838686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 14500941 - 14501058
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg----tttgctgctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||| || |||||||| ||||||||||||||||||    ||| |    ||| ||||||||||| ||||||| || || ||||||||||||||||    
T  14500941 gattgacatgggattgtgtggattcgaaagagtcgttaatgcttcttttcgttgttgtagggagttgattgtacgtgatctgatttcgtgttgacgatcg 14501040  T
Q  276 tttcatttgccaaattat 293  Q
     |||||| || |||||||    
T  14501041 attcattcgctaaattat 14501058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 9089955 - 9089997
Alignment:
Q  240 ttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||    
T  9089955 ttgatggtacgtgatccgatttcatgttgacgatcgtttcatt 9089997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 8110596 - 8110531
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattatag 295  Q
    ||||||||||||||| | ||||| ||||| || ||||||| ||||| |  ||||||||||||||||    
T  8110596 ttgcagggagttgatagcacgtgatccgattttgtgttgaagatcgatcaatttgccaaattatag 8110531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Original strand, 13565 - 13983
Alignment:
Q  7 tacgacggtttgtctctggttcacttt----ctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactgatgatcgcagtaat 102  Q
    |||||| |||||||||||||||||||     |||| ||||||||| ||||||||||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  13565 tacgacagtttgtctctggttcacttcaaacctttaaaggtggttacggtaccgttgttgagccagaaatggttgttgttatgttgatgatcgcagtaat 13664  T
Q  103 ggttggtgtgtgtggtttcactaatttccgtgctggcggtcgaagccactcccctatcaaacgtccgtggtttcgtagattgaaatgagactgtgtggac 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  13665 ggttggtgtgtgtggtttcgctaatttccgtgctggcggtcgaagccactcccctatcaaatgtccgtggtttcgtagattgaaatgagactgtgtgtac 13764  T
Q  203 tcgaaagagtcgttaatgtttgctgctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattataggtccgat 302  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||    
T  13765 tcgaaagagtcgttaatgcttgctgctttgcagggagttgatggtacgtgatccgaattcgtgttgacgattgtttcattcgccaaattataggcccgat 13864  T
Q  303 tggttcgtttgttagaattgattaaggttgaatattgtgtgttgttcttattgatgtattaccacccgttagggttgattcacatggtttaactaggtca 402  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  13865 tggttcgtttgttagaattgattagggttgaatactgtgtgttgttcttattgatgtattaccacccgtcagggttgattcacatggtttaactgggtca 13964  T
Q  403 ggttttatgtccccccagt 421  Q
    |||||||||||||||||||    
T  13965 ggttttatgtccccccagt 13983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 31 - 295
Target Start/End: Original strand, 18375941 - 18376213
Alignment:
Q  31 tttctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactgatgatcgc--agtaatggttggtgtgtgtggtttcactaatt 128  Q
    |||||| |||||||||||||| || |||||||||  | |||||||||||| | | |||| |||||   |  || ||||||||||||||||||||||||||    
T  18375941 tttcttggaaggtggttgcggaacggttgttgagtaagaaatggttgttactttgctgaagatcgacaacaaacggttggtgtgtgtggtttcactaatt 18376040  T
Q  129 tccgtgctggcggtcgaagccact--cccctatcaaacgtccgtggtttcgtagattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgct 226  Q
     ||||| | ||| ||||| ||| |  || |||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  18376041 accgtgttagcgatcgaatccattttccactatcaactgtccgtggtttcgtagattgaaatgagattgtgtggactcgaaagagtcgttaatgcttgct 18376140  T
Q  227 gct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattatag 295  Q
    |||    ||| ||| |||||||| || ||| ||||| || ||||||||| |||||| ||| ||||||||||||    
T  18376141 gctattgttgtaggaagttgatgatatgtgatccgattttgtgttgacggtcgttttattggccaaattatag 18376213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 5948145 - 5948016
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| ||      ||||||||||||||| | ||||| ||| | || ||||||| |||||    
T  5948145 gattgacatgagactgtgtggacttgaaagagtcgttaatgtttgttgtcgttgttgcagggagttgatagcacgtgatccaattttgtgttgaagatcg 5948046  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  5948045 atcaattcgccaaattatagacccgattgg 5948016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 282
Target Start/End: Complemental strand, 29688887 - 29688806
Alignment:
Q  205 gaaagagtcgttaatgtttgctg-ct---ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    |||||||||||||||||||| || ||   |||||||||||||||||||||||   ||| |||||||||||||||||||||||    
T  29688887 gaaagagtcgttaatgtttgttgtctttgttgcagggagttgatggtacgtgaatcgatttcgtgttgacgatcgtttcatt 29688806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 34851504 - 34851445
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    ||||||||||||||||||||||| || || |||||||||||||||| |||||| ||||||    
T  34851504 ttgcagggagttgatggtacgtgatctgatttcgtgttgacgatcggttcattcgccaaa 34851445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 27020384 - 27020503
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| |||     ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  27020384 gattgacatgagactgtgtggacttaaaagagtcgttaatgattgttgccgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 27020483  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  27020484 atcaattcgccaaattatag 27020503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Original strand, 1206661 - 1206722
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaatt 291  Q
    ||||||||||||||||||||||| ||||  |||||||| ||||||| |||||| ||||||||    
T  1206661 ttgcagggagttgatggtacgtgatccggtttcgtgttaacgatcggttcattcgccaaatt 1206722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 39295879 - 39295769
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttc 279  Q
    |||||| |||||||||||||||||  |||| |||||||||| |||     ||||||||||||||||  ||||| ||||| || ||||||| ||||| |      
T  39295879 gattgacatgagactgtgtggacttaaaagtgtcgttaatgcttg-----ttgcagggagttgatgacacgtgatccgattttgtgttgaagatcgatca 39295785  T
Q  280 atttgccaaattatag 295  Q
    ||| ||||||||||||    
T  39295784 attcgccaaattatag 39295769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 19585896 - 19585847
Alignment:
Q  195 gtgtggactcgaaagagtcgttaatgtttgctgctttgcagggagttgat 244  Q
    |||||||||||||||||||||||||| ||| ||   ||||||||||||||    
T  19585896 gtgtggactcgaaagagtcgttaatgcttgttgtggtgcagggagttgat 19585847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 289
Target Start/End: Complemental strand, 37010521 - 37010469
Alignment:
Q  237 gagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    ||||||||||| |||| | ||| |||||||||||||||| |||||| ||||||    
T  37010521 gagttgatggtgcgtgattcgatttcgtgttgacgatcgattcattcgccaaa 37010469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 295
Target Start/End: Original strand, 25899075 - 25899366
Alignment:
Q  14 gtttgtctctggttcactttctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactgatgatcgcagtaat-ggttggtgtg 112  Q
    ||||||||| | ||| || |||||  |||||||||||||||  ||||||||||| |||||  ||||| | |  ||  ||||||| |||  ||||||||      
T  25899075 gtttgtctccgattcgctatctttagaggtggttgcggtactattgttgagccagaaatgactgttaatttgttgtagatcgcactaaacggttggtgca 25899174  T
Q  113 tgtggtttcactaatttccgtgctggcggtcgaagccactcccc--tatcaaacgtccgtggtttcgtagattgaaatgagactgtgtggactcgaaaga 210  Q
    |||||||||| ||||| ||||| ||||||||||| | |||| ||  | ||||  ||  ||||||||||||||||||||| |||||||| |||||||||||    
T  25899175 tgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaattgtttgtggtttcgtagattgaaatgggactgtgtcgactcgaaaga 25899274  T
Q  211 gtcgttaa----tgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattatag 295  Q
    ||||||||    |||||| || |    ||||||||||||||| ||| ||| ||||| |||||||| ||||| | |||||| ||||||||||||    
T  25899275 gtcgttaatacttgtttgttgttgttgttgcagggagttgat-gtatgtgatccgatttcgtgttaacgattgattcattcgccaaattatag 25899366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 3336085 - 3336204
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||| |||||||| |||||||||||||||| ||| ||||    ||||| ||||||||||| ||||| ||||| || ||||||| |||||    
T  3336085 gattgacatgagactatgtggacttgaaagagtcgttaatgcttgttgctgttgttgcatggagttgatggcacgtgatccgattttgtgttgaagatcg 3336184  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  3336185 atcaattcgccaaattatag 3336204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 4062511 - 4062630
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| |||     ||||||||||||||||| ||||| ||||| || ||||||| |||||    
T  4062511 gattgacatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg 4062610  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  4062611 atcaattcgccaaattatag 4062630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 28414189 - 28414308
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| |||     ||||||||||||||||| ||||| ||||| || ||||||| |||||    
T  28414189 gattgacatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg 28414288  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  28414289 atcaattcgccaaattatag 28414308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 37969134 - 37969015
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| |||     ||||||||||||||||| ||||| ||||| || ||||||| |||||    
T  37969134 gattgacatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg 37969035  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  37969034 atcaattcgccaaattatag 37969015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 46028385 - 46028486
Alignment:
Q  192 actgtgtggactcgaaagagtcgttaatgtttgctg-ct---ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgcca 287  Q
    ||||| |||||||||||||||||| |||| ||| || ||   ||||| ||||||||||||||||| ||||| || ||||||||||||| |||||| ||||    
T  46028385 actgtatggactcgaaagagtcgtcaatgcttgttgtctttgttgcaaggagttgatggtacgtgatccgattttgtgttgacgatcggttcattcgcca 46028484  T
Q  288 aa 289  Q
    ||    
T  46028485 aa 46028486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 33951805 - 33951924
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||| ||||||| ||| |||     ||||||||||||||||  ||||| ||||| || ||||||| |||||    
T  33951805 gattgacatgagactgtgtggacttgaaagagttgttaatgcttgttgccgttattgcagggagttgatgacacgtgatccgattttgtgttgaagatcg 33951904  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  33951905 atcaattcgccaaattatag 33951924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 22402364 - 22402288
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtg 252  Q
    |||||| ||||||||||||| ||| |||||||||||||||| ||| |||     ||||||||||||||||| |||||    
T  22402364 gattgacatgagactgtgtgaacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtg 22402288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Complemental strand, 44030954 - 44030904
Alignment:
Q  371 ttagggttgattcacatggtttaactaggtcaggttttatgtccccccagt 421  Q
    ||||||||||  ||| ||| || ||||||||||||||||||||||||||||    
T  44030954 ttagggttgacacacttggattcactaggtcaggttttatgtccccccagt 44030904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 587234 - 587183
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||| ||||||||| |||| |||||||||||||| || ||||||    
T  587234 ttgcagggagttgctggtacgtgatccg-attcgtgttgacgagcggttcatt 587183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 20325 - 20212
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||| ||||||| |||||||||||||||||||||| ||| || |    ||||||||||||||||||||||| | ||| ||||||||||||||||    
T  20325 gattgacatgggactgtgaggactcgaaagagtcgttaatgcttgttgttgtttttgcagggagttgatggtacgtgattcgatttcgtgttgacgatcg 20226  T
Q  276 tttcatttgccaaa 289  Q
     || ||||||||||    
T  20225 atttatttgccaaa 20212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 193 - 295
Target Start/End: Complemental strand, 5287675 - 5287571
Alignment:
Q  193 ctgtgtggactcgaaagagtcgttaatgtttgctgcttt--gcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaat 290  Q
    |||||||||||||||||||||||||||| ||| || | |  |||||||||||||| |||||| || || |||||||||||||||| |||||| ||||||     
T  5287675 ctgtgtggactcgaaagagtcgttaatgcttgatgttgttggcagggagttgatgatacgtgatctgatttcgtgttgacgatcgattcattcgccaaaa 5287576  T
Q  291 tatag 295  Q
    |||||    
T  5287575 tatag 5287571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 6616988 - 6616869
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||||||||||| ||| |||     ||||||||||||||||| ||||| ||||| || ||||||| |||||    
T  6616988 gattgatatgagactgtgtggacttaaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg 6616889  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  6616888 atcaattcgccaaattatag 6616869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 34638615 - 34638744
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  34638615 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 34638714  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  34638715 atcaattcgccaaattatagacccgattgg 34638744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 42053584 - 42053455
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  42053584 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 42053485  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  42053484 atcaattcgccaaattatagacccgattgg 42053455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 21949870 - 21949987
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||| |||||| |||||||||||||||| ||| || |    ||||| ||||||||||| ||||| ||||| || ||||||| |||||    
T  21949870 gattgacatgagactgtatggacttgaaagagtcgttaatgcttgttgttgttgttgcatggagttgatggcacgtgatccgattttgtgttgaagatcg 21949969  T
Q  276 tttcatttgccaaattat 293  Q
     |  ||| ||||||||||    
T  21949970 atcaattcgccaaattat 21949987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 34935346 - 34935396
Alignment:
Q  196 tgtggactcgaaagagtcgttaatgtttgctgctttgcagggagttgatgg 246  Q
    ||||||||||||||||||||||||||||||||   |||||| |||||||||    
T  34935346 tgtggactcgaaagagtcgttaatgtttgctgtcgtgcaggaagttgatgg 34935396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 289
Target Start/End: Complemental strand, 37573458 - 37573345
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg-ctttg---cagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||| |||| ||||||||||||||||||||||||| ||| || | |||   |||| |||||||||| ||||   ||| |||||||||| |||||    
T  37573458 gattgacatgggactatgtggactcgaaagagtcgttaatgcttgttgtcattgtttcaggaagttgatggttcgtgagtcgacttcgtgttgaggatcg 37573359  T
Q  276 tttcatttgccaaa 289  Q
     |||||| ||||||    
T  37573358 attcattcgccaaa 37573345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 21292398 - 21292504
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||| ||||||||||||| ||||||||| ||| ||      ||||||| ||||||| || |||| ||||| ||| | ||||||||||    
T  21292398 gattgatatgagactgtatggactcgaaagaatcgttaatgcttgttgtcgttgttgcaggaagttgatagtgcgtgatccgatttcattttgacgatcg 21292497  T
Q  276 tttcatt 282  Q
     ||||||    
T  21292498 attcatt 21292504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 24648444 - 24648497
Alignment:
Q  242 gatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattatag 295  Q
    ||||||||||| ||||| ||||||||||||| || || ||| ||||||||||||    
T  24648444 gatggtacgtgatccgatttcgtgttgacgaacgatttattcgccaaattatag 24648497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 33440227 - 33440259
Alignment:
Q  194 tgtgtggactcgaaagagtcgttaatgtttgct 226  Q
    ||||||||||||||||||||||||||| |||||    
T  33440227 tgtgtggactcgaaagagtcgttaatgcttgct 33440259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 29731023 - 29731135
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg--ctt--tgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||| |||| | |||||||||||||||||| |||| ||| ||  |||  | |||||||||||||||||||| ||||| ||||||||||||||||    
T  29731023 gattgacatgggactctatggactcgaaagagtcgtcaatgcttgatgtccttgtttcagggagttgatggtacgtgatccgatttcgtgttgacgatcg 29731122  T
Q  276 tttcatttgccaa 288  Q
    ||||||| |||||    
T  29731123 tttcattcgccaa 29731135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 180 - 305
Target Start/End: Complemental strand, 16482455 - 16482326
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  16482455 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 16482356  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||| ||||||||    
T  16482355 atcaattcgccaaattataggcccgattgg 16482326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 191 - 289
Target Start/End: Complemental strand, 6764258 - 6764159
Alignment:
Q  191 gactgtgtggactcgaaagagtcgttaatgtttgctgct-ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||| |||||||||||||||||| |||| ||| |||  ||||||||||||||||  ||||| ||| | ||||||||||| |||| |||||| ||||||    
T  6764258 gactgtatggactcgaaagagtcgtcaatgcttgttgccgttgcagggagttgatgacacgtgatccaatttcgtgttgacaatcgattcattcgccaaa 6764159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 39561038 - 39561150
Alignment:
Q  187 atgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||||||| |||||||||||||||| ||| |||     |||||||||||| |||| ||||| ||||| || ||||||| ||||| |  |||    
T  39561038 atgagactgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagtttatggcacgtgatccgattttgtgttgaagatcgatcaatt 39561137  T
Q  283 tgccaaattatag 295  Q
     ||||||||||||    
T  39561138 cgccaaattatag 39561150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 16484904 - 16484785
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||||||||||||||  ||||||| ||||||| ||| |||     ||||||||||||||||| ||||| ||||| || ||||||| |||||    
T  16484904 gattgacatgagactgtgtggacttaaaagagttgttaatgcttgttgccgttgttgcagggagttgatggcacgtgatccgattttgtgttgaagatcg 16484805  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  16484804 atcaattcgccaaattatag 16484785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 294
Target Start/End: Original strand, 16044565 - 16044663
Alignment:
Q  200 gactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattata 294  Q
    ||||||||| ||||||||||  ||||||||    |||||||||||||||| |||||| ||||| || |||||||||||||  ||||| |||||| ||||    
T  16044565 gactcgaaatagtcgttaatacttgctgctgttgttgcagggagttgatgatacgtgatccgattttgtgttgacgatcgagtcattcgccaaactata 16044663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 17110308 - 17110395
Alignment:
Q  199 ggactcgaaagagtcgttaatgtttgctg-ct---ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||||||| |||| ||| || ||   ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||    
T  17110308 ggactcgaaagagtcgtcaatgcttgatgtctttgttgcaggaagttgatggtacgtgatccgatttcgtgttgacgatcgattcatt 17110395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 40834999 - 40834880
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||| |||||||||| |||||||||||||||| ||| |||     ||||||||||||||||| || || ||||| || ||| ||| |||||    
T  40834999 gattgacatgagagtgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggcacatgatccgattttgtgatgaagatcg 40834900  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  40834899 atcaattcgccaaattatag 40834880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 295
Target Start/End: Complemental strand, 15683639 - 15683530
Alignment:
Q  191 gactgtgtggactcgaaagagtcgttaatgtttgctgc-----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgc 285  Q
    ||||||||| |||||||| |||| |||||| |||||||     |||||| ||||||||||||| ||| ||||| ||||||||||||||||  ||||| ||    
T  15683639 gactgtgtgaactcgaaacagtcattaatgcttgctgcgattttttgcatggagttgatggtatgtgatccgatttcgtgttgacgatcgcatcattcgc 15683540  T
Q  286 caaattatag 295  Q
    ||||||||||    
T  15683539 caaattatag 15683530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 1805547 - 1805667
Alignment:
Q  190 agactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgc 285  Q
    ||||||||||||||||||||||||||||||||||| ||      ||||| |||||| |||| ||||| ||  | ||| |||||||||||| |||||||||    
T  1805547 agactgtgtggactcgaaagagtcgttaatgtttgatgtcgttgttgcatggagttaatggcacgtgatctaatttcatgttgacgatcgattcatttgc 1805646  T
Q  286 caaattataggtccgattggt 306  Q
    |||| |||||  |||||||||    
T  1805647 caaaatatagacccgattggt 1805667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 18381480 - 18381609
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  18381480 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 18381579  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  18381580 atcaattcgccaaattatagacccgattgg 18381609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 195 - 246
Target Start/End: Complemental strand, 36017403 - 36017352
Alignment:
Q  195 gtgtggactcgaaagagtcgttaatgtttgctgctttgcagggagttgatgg 246  Q
    |||||| ||||||||||||||||||| |||||||| ||||||||||||||||    
T  36017403 gtgtgggctcgaaagagtcgttaatgcttgctgctgtgcagggagttgatgg 36017352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 274
Target Start/End: Original strand, 11958745 - 11958832
Alignment:
Q  191 gactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatc 274  Q
    |||||||||||||||||||||||||||||| ||| |||     |||||||||||||||||||| || | ||| || ||||||| ||||    
T  11958745 gactgtgtggactcgaaagagtcgttaatgcttgttgccgttgttgcagggagttgatggtacatgattcgatttagtgttgatgatc 11958832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 3941694 - 3941590
Alignment:
Q  187 atgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    |||||||||| |||||||||||||||||| |||| ||||||      ||||||| |||||||| ||| || |||| ||| ||||||||||||| ||||||    
T  3941694 atgagactgtatggactcgaaagagtcgtcaatgcttgctgtcgttgttgcaggaagttgatgatacatgatccg-atttgtgttgacgatcgattcatt 3941596  T
Q  283 tgccaa 288  Q
     |||||    
T  3941595 cgccaa 3941590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 6420866 - 6420826
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg 220  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  6420866 gattgacatgagactgtgtggacttgaaagagtcgttaatg 6420826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 12498836 - 12498876
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg 220  Q
    |||||| ||||||||||||||||| ||||||||||||||||    
T  12498836 gattgacatgagactgtgtggacttgaaagagtcgttaatg 12498876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 289
Target Start/End: Complemental strand, 8777022 - 8776964
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||||| |||||||||||||| |||| |||| |||||||||||| |||||| ||||||    
T  8777022 ttgcagggggttgatggtacgtgatccg-attcatgttgacgatcgattcattcgccaaa 8776964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 419
Target Start/End: Complemental strand, 15683493 - 15683381
Alignment:
Q  305 gttcgtttgttagaattgattaaggttgaatattgtgtgttgttctt-attgatgtattaccacccgttagggttgattcacatggtttaactaggtcag 403  Q
    |||||||| ||||||||||||| ||||| ||    ||||||||||||  ||||||||||   ||| |||| ||||||||||||||| |  | | ||| ||    
T  15683493 gttcgtttcttagaattgattagggttggatccactgtgttgttcttctttgatgtatt---acctgttatggttgattcacatggatcgattgggttag 15683397  T
Q  404 gttttatgtcccccca 419  Q
    ||||||||||||||||    
T  15683396 gttttatgtcccccca 15683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 30750764 - 30750672
Alignment:
Q  198 tggactcgaaagagtcgttaatgtttgctgct-ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||||||  | ||| ||||| |||||||||||||||| |||||| ||||||    
T  30750764 tggactcgaaagagtcgtcaatgcttgctgccgttgcagggagttgatgacatgtgatccgatttcgtgttgacgatcgattcattcgccaaa 30750672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 416
Target Start/End: Original strand, 4159983 - 4160088
Alignment:
Q  310 tttgttagaattgattaaggttgaatatt--gtgtgttgttcttattgatgtattaccacccgttagggttgattcacatggtttaactaggtcaggttt 407  Q
    ||||||||||||||||| ||||| || |   ||||||||||||| ||||||||||| |   ||||||||||||||||||||| || |||||||||| | |    
T  4159983 tttgttagaattgattatggttggatttaacgtgtgttgttctttttgatgtattatc---cgttagggttgattcacatggattgactaggtcagatat 4160079  T
Q  408 tatgtcccc 416  Q
    |||||||||    
T  4160080 tatgtcccc 4160088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 291
Target Start/End: Original strand, 12528286 - 12528391
Alignment:
Q  190 agactgtgtggactcgaaagagtcgttaatgtttgctgct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgc 285  Q
    ||||||||||||||||||||||||||||| |  || || |    ||| ||||||||||||||| ||| | ||| || |||||||| ||||||||||||||    
T  12528286 agactgtgtggactcgaaagagtcgttaacgcatgttgttgttgttgtagggagttgatggtatgtgatacgattttgtgttgaccatcgtttcatttgc 12528385  T
Q  286 caaatt 291  Q
    ||||||    
T  12528386 caaatt 12528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 40267771 - 40267652
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| |||||| |||||||||| |||||||||||||||| ||| |||     |||||||||| |||| | ||||| ||||| || ||||||| |||||    
T  40267771 gattgacatgagattgtgtggacttgaaagagtcgttaatgcttgttgccgttgttgcagggagctgatagcacgtgatccgattttgtgttgaagatcg 40267672  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  40267671 atcaattcgccaaattatag 40267652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 27544979 - 27544919
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaatt 291  Q
    ||||||||||||||||||| ||| ||| | |||||||||||| ||| |||||||||||||||    
T  27544979 ttgcagggagttgatggtatgtgatcc-atttcgtgttgacggtcggttcatttgccaaatt 27544919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 4159831 - 4159871
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg 220  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  4159831 gattgaaatgtgactgtgtggactcgaaagagttgttaatg 4159871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 3552387 - 3552438
Alignment:
Q  195 gtgtggactcgaaagagtcgttaatgtttgctgctttgcagggagttgatgg 246  Q
    |||||||||||||||||||||||||  |||||||  || |||||||||||||    
T  3552387 gtgtggactcgaaagagtcgttaatacttgctgccgtgtagggagttgatgg 3552438  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 9160430 - 9160470
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg 220  Q
    |||||| |||||||||| |||||||||||||||| ||||||    
T  9160430 gattgacatgagactgtatggactcgaaagagtccttaatg 9160470  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 9894022 - 9894073
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatt 282  Q
    ||||||||||||||||| ||||| || || |||||||||||||||| ||||||    
T  9894022 ttgcagggagttgatggcacgtgatctga-ttcgtgttgacgatcgattcatt 9894073  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 9513284 - 9513397
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg-ct----ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatc 274  Q
    |||||| ||| |||||||||||||||||||||||   |||| |||||| ||    ||||||||||||||||||||||| |||| ||| ||||||||||||    
T  9513284 gattgacatgggactgtgtggactcgaaagagtcaccaatgcttgctgtctgttgttgcagggagttgatggtacgtgatccg-attagtgttgacgatc 9513382  T
Q  275 gtttcatttgccaaa 289  Q
    | |||||| ||||||    
T  9513383 gattcattcgccaaa 9513397  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 720396 - 720455
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||| |||||| ||||||    
T  720396 ttgcagggagttgatagtacgtgatccgatttcgtgttgacgatcggttcattcgccaaa 720455  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 5474241 - 5474297
Alignment:
Q  233 cagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaa 289  Q
    |||||||||||||||||||| ||||| || ||||||||||||| |||||| ||||||    
T  5474241 cagggagttgatggtacgtgatccgattttgtgttgacgatcgattcattcgccaaa 5474297  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 18899020 - 18899149
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||| ||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  18899020 gattgacatgagactgtgtgaacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 18899119  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  18899120 atcaattcgccaaattatagacccgattgg 18899149  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 15559624 - 15559584
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatg 220  Q
    |||||| ||| ||||||||||||||||||||||||||||||    
T  15559624 gattgacatgggactgtgtggactcgaaagagtcgttaatg 15559584  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 24316744 - 24316808
Alignment:
Q  230 ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcgtttcatttgccaaattatag 295  Q
    ||||||||||||| ||||||||| |||| |||||||||||||| || |||||| | |||| |||||    
T  24316744 ttgcagggagttgctggtacgtgatccg-attcgtgttgacgagcggttcattcgacaaactatag 24316808  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 15559420 - 15559368
Alignment:
Q  366 acccgttagggttgattcacatggtttaactaggtcaggttttatgtcccccc 418  Q
    |||||||||||| ||| ||| ||| ||| || |||||||||||||||||||||    
T  15559420 acccgttagggtggatccacttggattatctgggtcaggttttatgtcccccc 15559368  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 22460620 - 22460490
Alignment:
Q  30 ctttctttgaaggtggttgcggtaccgttgttgagccataaatggttgttattatactg---atgatcgcagtaa-tggttggtgtgtgtggtttcacta 125  Q
    ||||||||| ||| ||||||| |||  |||||| || | |||||||||||||  |||||   ||||||||| ||| |||||||||||||| | ||| |||    
T  22460620 ctttctttgtagggggttgcgatactattgttgggctagaaatggttgttatattactgttgatgatcgcattaaatggttggtgtgtgttgattcgcta 22460521  T
Q  126 atttccgtgctggcggtcgaagccactcccc 156  Q
     || ||||| ||||||| ||| | |||||||    
T  22460520 tttaccgtgttggcggttgaatctactcccc 22460490  T

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Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 305
Target Start/End: Original strand, 194777 - 194906
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctg----ctttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| ||      ||||||||||||||| | ||||| ||||| || ||||||| |||||    
T  194777 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgtcgttgttgcagggagttgatagcacgtgatccgattttgtgttgaagatcg 194876  T
Q  276 tttcatttgccaaattataggtccgattgg 305  Q
     |  ||| ||||||||||||  ||||||||    
T  194877 atcaattcgccaaattatagacccgattgg 194906  T

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Target: scaffold0088 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 295
Target Start/End: Complemental strand, 1968 - 1849
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgctgc----tttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||     |||| |||||||||||| ||||| ||||| || ||||  | |||||    
T  1968 gattgatatgagactgtgtggacttgaaagagtcgttaatgtttgttgccgttgttgccgggagttgatggcacgtgatccgattttgtgtgaaagatcg 1869  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  1868 atcaattcgccaaattatag 1849  T

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Target: scaffold0088; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 9352 - 9308
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttg 224  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||    
T  9352 gattgatatgagactgtgtggacttgaaagagttgttaatgtttg 9308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 295
Target Start/End: Original strand, 4161 - 4280
Alignment:
Q  180 gattgaaatgagactgtgtggactcgaaagagtcgttaatgtttgct---gct-ttgcagggagttgatggtacgtggtccgaattcgtgttgacgatcg 275  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| |   ||| ||| ||||||||||| | ||||| ||||| || || |||| |||||    
T  4161 gattgacatgagactgtgtggacttgaaagagtcgttaatgcttgttgacgctgttgtagggagttgatagcacgtgatccgattttgtattgaagatcg 4260  T
Q  276 tttcatttgccaaattatag 295  Q
     |  ||| ||||||||||||    
T  4261 atcaattcgccaaattatag 4280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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